Evolution of pyrrolysyl-tRNA synthetase: From methanogenesis to genetic code expansion

NG Koch, N Budisa - Chemical Reviews, 2024 - ACS Publications
Over 20 years ago, the pyrrolysine encoding translation system was discovered in specific
archaea. Our Review provides an overview of how the once obscure pyrrolysyl-tRNA …

Aminoacyl-tRNA synthetases

MAR Gomez, M Ibba - Rna, 2020 - rnajournal.cshlp.org
The aminoacyl-tRNA synthetases are an essential and universally distributed family of
enzymes that plays a critical role in protein synthesis, pairing tRNAs with their cognate …

Genome-wide mapping of mutations at single-nucleotide resolution for protein, metabolic and genome engineering

AD Garst, MC Bassalo, G Pines, SA Lynch… - Nature …, 2017 - nature.com
Improvements in DNA synthesis and sequencing have underpinned comprehensive
assessment of gene function in bacteria and eukaryotes. Genome-wide analyses require …

Engineering pyrrolysine systems for genetic code expansion and reprogramming

DL Dunkelmann, JW Chin - Chemical Reviews, 2024 - ACS Publications
Over the past 16 years, genetic code expansion and reprogramming in living organisms has
been transformed by advances that leverage the unique properties of pyrrolysyl-tRNA …

Design, synthesis, and testing toward a 57-codon genome

N Ostrov, M Landon, M Guell, G Kuznetsov, J Teramoto… - Science, 2016 - science.org
Recoding—the repurposing of genetic codons—is a powerful strategy for enhancing
genomes with functions not commonly found in nature. Here, we report computational …

Continuous directed evolution of aminoacyl-tRNA synthetases

DI Bryson, C Fan, LT Guo, C Miller, D Söll… - Nature chemical …, 2017 - nature.com
Directed evolution of orthogonal aminoacyl-tRNA synthetases (AARSs) enables site-specific
installation of noncanonical amino acids (ncAAs) into proteins. Traditional evolution …

Genetic code expansion: inception, development, commercialization

M Manandhar, E Chun… - Journal of the American …, 2021 - ACS Publications
Virtually all natural proteins are built from only 20 amino acids, and while this makes
possible all the functions they perform, the ability to encode other amino acids selected for …

Multiplex suppression of four quadruplet codons via tRNA directed evolution

EA DeBenedictis, GD Carver, CZ Chung, D Söll… - Nature …, 2021 - nature.com
Genetic code expansion technologies supplement the natural codon repertoire with
assignable variants in vivo, but are often limited by heterologous translational components …

Crystal structures reveal an elusive functional domain of pyrrolysyl-tRNA synthetase

T Suzuki, C Miller, LT Guo, JML Ho, DI Bryson… - Nature chemical …, 2017 - nature.com
Pyrrolysyl-tRNA synthetase (PylRS) is a major tool in genetic code expansion using
noncanonical amino acids, yet its structure and function are not completely understood …

Genetic encoding of three distinct noncanonical amino acids using reprogrammed initiator and nonsense codons

JM Tharp, O Vargas-Rodriguez, A Schepartz… - ACS chemical …, 2021 - ACS Publications
We recently described an orthogonal initiator tRNA (i tRNATy2) that can initiate protein
synthesis with noncanonical amino acids (ncAAs) in response to the UAG nonsense codon …