A review of methods to determine viability, vitality, and metabolic rates in microbiology

O Braissant, M Astasov-Frauenhoffer… - Frontiers in …, 2020 - frontiersin.org
Viability and metabolic assays are commonly used as proxies to assess the overall
metabolism of microorganisms. The variety of these assays combined with little information …

Microbial carbon use efficiency: accounting for population, community, and ecosystem-scale controls over the fate of metabolized organic matter

KM Geyer, E Kyker-Snowman, AS Grandy, SD Frey - Biogeochemistry, 2016 - Springer
Microbial carbon use efficiency (CUE) is a critical regulator of soil organic matter dynamics
and terrestrial carbon fluxes, with strong implications for soil biogeochemistry models. While …

Thermodynamics of soil microbial metabolism: Applications and functions

N Barros - Applied Sciences, 2021 - mdpi.com
Featured Application Energy rules life. All living systems keep themselves alive by balancing
the energy input and output by universal thermodynamic principles. Soils are not an …

Rhizosphere hotspots: root hairs and warming control microbial efficiency, carbon utilization and energy production

X Zhang, Y Kuzyakov, H Zang, MA Dippold… - Soil Biology and …, 2020 - Elsevier
Root hairs proliferation and warming strongly influence exudate release, enzyme activities
and microbial substrate utilization. However, how the presence of root hairs regulates those …

Linking soil organic matter thermal stability with contents of clay, bound water, organic carbon and nitrogen

J Kučerík, D Tokarski, MS Demyan, I Merbach… - Geoderma, 2018 - Elsevier
Thermogravimetry is a technique measuring mass change during programmed heating. In
soil analysis, it is used for determination of content of volatile fractions, thermally labile and …

[HTML][HTML] Spatial substrate heterogeneity limits microbial growth as revealed by the joint experimental quantification and modeling of carbon and heat fluxes

MG Endress, F Dehghani, S Blagodatsky… - Soil Biology and …, 2024 - Elsevier
Spatial heterogeneity is a pervasive feature of soils, affecting the distribution of carbon
sources as well as their microbial consumers. Heterogeneous addition of substrates typically …

Cortical cell diameter is key to energy costs of root growth in wheat

T Colombi, AM Herrmann, P Vallenback… - Plant …, 2019 - academic.oup.com
Root growth requires substantial amounts of energy and thus carbohydrates. The energy
costs of root growth are particularly high in both dry and compacted soil, due to high soil …

Differences in substrate use efficiency: impacts of microbial community composition, land use management, and substrate complexity

T Bölscher, L Wadsö, G Börjesson… - Biology and Fertility of …, 2016 - Springer
Microbial substrate use efficiency is an important property in process-based soil organic
matter models, but is often assumed to be constant in mechanistic models. However …

Enhancing insights: exploring the information content of calorespirometric ratio in dynamic soil microbial growth processes through calorimetry

S Yang, E Di Lodovico, A Rupp, H Harms… - Frontiers in …, 2024 - frontiersin.org
Catalytic activity of microbial communities maintains the services and functions of soils.
Microbial communities require energy and carbon for microbial growth, which they obtain by …

Resource legacies of organic and conventional management differentiate soil microbial carbon use

MM Arcand, DJ Levy-Booth, BL Helgason - Frontiers in microbiology, 2017 - frontiersin.org
Long-term contrasts in agricultural management can shift soil resource availability with
potential consequences to microbial carbon (C) use efficiency (CUE) and the fate of C in …