A genomic perspective on hybridization and speciation

BA Payseur, LH Rieseberg - Molecular ecology, 2016 - Wiley Online Library
Hybridization among diverging lineages is common in nature. Genomic data provide a
special opportunity to characterize the history of hybridization and the genetic basis of …

Analysis of population genomic data from hybrid zones

Z Gompert, EG Mandeville… - Annual Review of Ecology …, 2017 - annualreviews.org
Hybrid zones provide a powerful opportunity to analyze ecological and evolutionary
interactions between divergent lineages. As such, research on hybrid zones has played a …

Stacks: an analysis tool set for population genomics

J Catchen, PA Hohenlohe, S Bassham… - Molecular …, 2013 - Wiley Online Library
Massively parallel short‐read sequencing technologies, coupled with powerful software
platforms, are enabling investigators to analyse tens of thousands of genetic markers. This …

Hybridization, introgression, and the nature of species boundaries

RG Harrison, EL Larson - Journal of Heredity, 2014 - academic.oup.com
Species can be defined as populations that are diagnosably distinct, reproductively isolated,
cohesive, or exclusive groups of organisms. Boundaries between species in sympatry are …

RAD seq underestimates diversity and introduces genealogical biases due to nonrandom haplotype sampling

B Arnold, RB Corbett‐Detig, D Hartl… - Molecular …, 2013 - Wiley Online Library
Reduced representation genome‐sequencing approaches based on restriction digestion
are enabling large‐scale marker generation and facilitating genomic studies in a wide range …

Genomewide SNP markers breathe new life into phylogeography and species delimitation for the problematic short‐necked turtles (Chelidae: Emydura) of eastern …

A Georges, B Gruber, GB Pauly, D White… - Molecular …, 2018 - Wiley Online Library
Understanding the evolutionary history of diversifying lineages and the delineation of
evolutionarily significant units and species remains major challenges for evolutionary …

Heterogeneous genome divergence, differential introgression, and the origin and structure of hybrid zones

RG Harrison, EL Larson - Molecular ecology, 2016 - Wiley Online Library
Hybrid zones have been promoted as windows on the evolutionary process and as
laboratories for studying divergence and speciation. Patterns of divergence between …

Clines on the seashore: The genomic architecture underlying rapid divergence in the face of gene flow

AM Westram, M Rafajlović, P Chaube, R Faria… - Evolution …, 2018 - academic.oup.com
Adaptive divergence and speciation may happen despite opposition by gene flow.
Identifying the genomic basis underlying divergence with gene flow is a major task in …

Quantifying population genetic differentiation from next-generation sequencing data

M Fumagalli, FG Vieira, TS Korneliussen, T Linderoth… - Genetics, 2013 - academic.oup.com
Over the past few years, new high-throughput DNA sequencing technologies have
dramatically increased speed and reduced sequencing costs. However, the use of these …

Admixture and the organization of genetic diversity in a butterfly species complex revealed through common and rare genetic variants

Z Gompert, LK Lucas, CA Buerkle, ML Forister… - Molecular …, 2014 - Wiley Online Library
Detailed information about the geographic distribution of genetic and genomic variation is
necessary to better understand the organization and structure of biological diversity. In …