DNA methylation methods: Global DNA methylation and methylomic analyses

S Li, TO Tollefsbol - Methods, 2021 - Elsevier
DNA methylation provides a pivotal layer of epigenetic regulation in eukaryotes that has
significant involvement for numerous biological processes in health and disease. The …

Principles and challenges of genome-wide DNA methylation analysis

PW Laird - Nature Reviews Genetics, 2010 - nature.com
Methylation of cytosine bases in DNA provides a layer of epigenetic control in many
eukaryotes that has important implications for normal biology and disease. Therefore …

Succinate dehydrogenase mutation underlies global epigenomic divergence in gastrointestinal stromal tumor

JK Killian, SY Kim, M Miettinen, C Smith, M Merino… - Cancer discovery, 2013 - AACR
Gastrointestinal stromal tumors (GIST) harbor driver mutations of signal transduction kinases
such as KIT, or, alternatively, manifest loss-of-function defects in the mitochondrial succinate …

Epigenomic alterations and gene expression profiles in respiratory epithelia exposed to cigarette smoke condensate

F Liu, JK Killian, M Yang, RL Walker, JA Hong… - Oncogene, 2010 - nature.com
Limited information is available regarding epigenomic events mediating initiation and
progression of tobacco-induced lung cancers. In this study, we established an in vitro system …

Promoter methylation of argininosuccinate synthetase-1 sensitises lymphomas to arginine deiminase treatment, autophagy and caspase-dependent apoptosis

B Delage, P Luong, L Maharaj, C O'riain, N Syed… - Cell death & …, 2012 - nature.com
Tumours lacking argininosuccinate synthetase-1 (ASS1) are auxotrophic for arginine and
sensitive to amino-acid deprivation. Here, we investigated the role of ASS1 as a biomarker …

[HTML][HTML] Methylation profiling of mediastinal gray zone lymphoma reveals a distinctive signature with elements shared by classical Hodgkin's lymphoma and primary …

FC Eberle, J Rodriguez-Canales, L Wei… - …, 2011 - ncbi.nlm.nih.gov
Background Mediastinal gray zone lymphoma is a newly recognized entity with transitional
morphological and immunophenotypic features between the nodular sclerosis subtype of …

The utilization of formalin fixed‐paraffin‐embedded specimens in high throughput genomic studies

P Zhang, BD Lehmann, Y Shyr… - International journal of …, 2017 - Wiley Online Library
High throughput genomic assays empower us to study the entire human genome in short
time with reasonable cost. Formalin fixed‐paraffin‐embedded (FFPE) tissue processing …

A comprehensive microarray-based DNA methylation study of 367 hematological neoplasms

JI Martin-Subero, O Ammerpohl, M Bibikova… - PloS one, 2009 - journals.plos.org
Background Alterations in the DNA methylation pattern are a hallmark of leukemias and
lymphomas. However, most epigenetic studies in hematologic neoplasms (HNs) have …

Comprehensive DNA methylation analysis of benign and malignant adrenocortical tumors

AL Fonseca, J Kugelberg, LF Starker… - Genes …, 2012 - Wiley Online Library
The molecular pathogenesis of benign and malignant adrenocortical tumors (ACT) is
incompletely clarified. The role of DNA methylation in adrenocortical tumorigenesis has not …

[HTML][HTML] Archival fine-needle aspiration cytopathology (FNAC) samples: untapped resource for clinical molecular profiling

JK Killian, RL Walker, M Suuriniemi, L Jones… - The Journal of Molecular …, 2010 - Elsevier
Microarray technologies provide high-resolution maps of chromosome imbalances and
epigenomic aberrations in the cancer cell genome. Such assays are often sensitive to …