[HTML][HTML] Assessment of GO-based protein interaction affinities in the large-scale human–coronavirus family interactome

SS Bandyopadhyay, AK Halder, S Saha, P Chatterjee… - Vaccines, 2023 - mdpi.com
SARS-CoV-2 is a novel coronavirus that replicates itself via interacting with the host
proteins. As a result, identifying virus and host protein-protein interactions could help …

[HTML][HTML] EPI-SF: essential protein identification in protein interaction networks using sequence features

S Saha, P Chatterjee, S Basu, M Nasipuri - PeerJ, 2024 - peerj.com
Proteins are considered indispensable for facilitating an organism's viability, reproductive
capabilities, and other fundamental physiological functions. Conventional biological assays …

[HTML][HTML] Detection of spreader nodes in human-SARS-CoV protein-protein interaction network

S Saha, P Chatterjee, M Nasipuri, S Basu - PeerJ, 2021 - peerj.com
The entire world is witnessing the coronavirus pandemic (COVID-19), caused by a novel
coronavirus (n-CoV) generally distinguished as Severe Acute Respiratory Syndrome …

FuzzyPPI: Large-Scale Interaction of Human Proteome at Fuzzy Semantic Space

AK Halder, SS Bandyopadhyay… - … Transactions on Big …, 2024 - ieeexplore.ieee.org
Large-scale protein-protein interaction (PPI) network of an organism provides key insights
into its cellular and molecular functionalities, signaling pathways and underlying disease …

NCSML-HDTD: Network Centrality and sequence-based machine learning methodology for human drug targets discovery of COVID-19

S Jha, C Das, S Saha - … Conference on Frontiers in Computing and …, 2022 - Springer
Identifying druggable human proteins is crucial to combat certain diseases like COVID-19.
This actually paves the way for implementing the drug repurposing study for any disease …

Adversarial contamination of networks in the setting of vertex nomination: a new trimming method

S Peyman, M Tang, V Lyzinski - arXiv preprint arXiv:2208.09710, 2022 - arxiv.org
As graph data becomes more ubiquitous, the need for robust inferential graph algorithms to
operate in these complex data domains is crucial. In many cases of interest, inference is …

Identification of Human Drug Targets for COVID-19 Based on Subcellular Localization Information, Gene Expression Data, and Node2vec

C Das, S Saha - International Conference on Frontiers in Computing …, 2023 - Springer
For the last few years, humans have been searching for a good solution to the lethal disease
of COVID-19. Finding human proteins that can be drugged to fight diseases like this is vital …

[HTML][HTML] Computational methods and strategies for combating COVID-19

S Basu, D Plewczynski - Methods (San Diego, Calif.), 2022 - ncbi.nlm.nih.gov
The special issue collects the original research papers on computational methods and
strategies for combating the COVID-19 pandemic. We proposed to cover the theoretical …