Transparent window vibrational probes for the characterization of proteins with high structural and temporal resolution

R Adhikary, J Zimmermann, FE Romesberg - Chemical reviews, 2017 - ACS Publications
Vibrational spectroscopy provides a direct route to the physicochemical characterization of
molecules. While both IR and Raman spectroscopy have been used for decades to provide …

Approaches for peptide and protein cyclisation

HC Hayes, LYP Luk, YH Tsai - Organic & biomolecular chemistry, 2021 - pubs.rsc.org
The cyclisation of polypeptides can play a crucial role in exerting biological functions,
maintaining stability under harsh conditions and conferring proteolytic resistance, as …

Asparaginyl endopeptidases: enzymology, applications and limitations

TMS Tang, LYP Luk - Organic & biomolecular chemistry, 2021 - pubs.rsc.org
Asparaginyl endopeptidases (AEP) are cysteine proteases found in mammalian and plant
cells. Several AEP isoforms from plant species were found to exhibit transpeptidase activity …

Use of an asparaginyl endopeptidase for chemo-enzymatic peptide and protein labeling

TMS Tang, D Cardella, AJ Lander, X Li… - Chemical …, 2020 - pubs.rsc.org
Asparaginyl endopeptidases (AEPs) are ideal for peptide and protein labeling. However,
because of the reaction reversibility, a large excess of labels or backbone modified …

Dynamic and electrostatic effects on the reaction catalyzed by HIV-1 protease

A Krzeminska, V Moliner… - Journal of the American …, 2016 - ACS Publications
HIV-1 Protease (HIV-1 PR) is one of the three enzymes essential for the replication process
of HIV-1 virus, which explains why it has been the main target for design of drugs against …

Electrostatics as the driving force behind the catalytic function of the monoamine oxidase a enzyme confirmed by quantum computations

A Prah, E Frančišković, J Mavri, J Stare - ACS catalysis, 2019 - ACS Publications
While the function of enzymes has been well-known to researchers for decades, the driving
force behind it is still a hotly debated topic. Herein, we report significant evidence for …

A complete thermodynamic analysis of enzyme turnover links the free energy landscape to enzyme catalysis

HBL Jones, SA Wells, EJ Prentice, A Kwok… - The FEBS …, 2017 - Wiley Online Library
Our understanding of how enzymes work is coloured by static structure depictions where the
enzyme scaffold is presented as either immobile, or in equilibrium between well‐defined …

Intracellular Application of an Asparaginyl Endopeptidase for Producing Recombinant Head-to-Tail Cyclic Proteins

TMS Tang, JM Mason - JACS Au, 2023 - ACS Publications
Peptide backbone cyclization is commonly observed in nature and is increasingly applied to
proteins and peptides to improve thermal and chemical stability and resistance to proteolytic …

Quantifying the limits of transition state theory in enzymatic catalysis

K Zinovjev, I Tuñón - … of the National Academy of Sciences, 2017 - National Acad Sciences
While being one of the most popular reaction rate theories, the applicability of transition state
theory to the study of enzymatic reactions has been often challenged. The complex dynamic …

Protein mass effects on formate dehydrogenase

C Ranasinghe, Q Guo, PJ Sapienza… - Journal of the …, 2017 - ACS Publications
Isotopically labeled enzymes (denoted as “heavy” or “Born–Oppenheimer” enzymes) have
been used to test the role of protein dynamics in catalysis. The original idea was that the …