[HTML][HTML] Host cell factors in HIV replication: meta-analysis of genome-wide studies

FD Bushman, N Malani, J Fernandes, I D'Orso… - PLoS …, 2009 - journals.plos.org
We have analyzed host cell genes linked to HIV replication that were identified in nine
genome-wide studies, including three independent siRNA screens. Overlaps among the …

The T-cell response to HIV

B Walker, A McMichael - Cold Spring …, 2012 - perspectivesinmedicine.cshlp.org
HIV is a disease in which the original clinical observations of severe opportunistic infections
gave the first clues regarding the underlying pathology, namely that HIV is essentially an …

A high-resolution HLA reference panel capturing global population diversity enables multi-ancestry fine-mapping in HIV host response

Y Luo, M Kanai, W Choi, X Li, S Sakaue, K Yamamoto… - Nature …, 2021 - nature.com
Fine-mapping to plausible causal variation may be more effective in multi-ancestry cohorts,
particularly in the MHC, which has population-specific structure. To enable such studies, we …

The first T cell response to transmitted/founder virus contributes to the control of acute viremia in HIV-1 infection

N Goonetilleke, MKP Liu… - Journal of experimental …, 2009 - rupress.org
Identification of the transmitted/founder virus makes possible, for the first time, a genome-
wide analysis of host immune responses against the infecting HIV-1 proteome. A complete …

Adaptation of HIV-1 to human leukocyte antigen class I

Y Kawashima, K Pfafferott, J Frater, P Matthews… - Nature, 2009 - nature.com
The rapid and extensive spread of the human immunodeficiency virus (HIV) epidemic
provides a rare opportunity to witness host–pathogen co-evolution involving humans. A focal …

Selection bias at the heterosexual HIV-1 transmission bottleneck

JM Carlson, M Schaefer, DC Monaco, R Batorsky… - Science, 2014 - science.org
Introduction Heterosexual HIV-1 transmission is an inefficient process with rates reported at<
1% per unprotected sexual exposure. When transmission occurs, systemic infection is …

HLA-B57/B* 5801 human immunodeficiency virus type 1 elite controllers select for rare gag variants associated with reduced viral replication capacity and strong …

T Miura, MA Brockman, A Schneidewind… - Journal of …, 2009 - Am Soc Microbiol
Human immunodeficiency virus type 1 (HIV-1) elite controllers (EC) maintain viremia below
the limit of commercial assay detection (< 50 RNA copies/ml) in the absence of antiviral …

[HTML][HTML] The impact of differential antiviral immunity in children and adults

AJ Prendergast, P Klenerman… - Nature Reviews …, 2012 - nature.com
The course of immune maturation has evolved to favour survival at each stage of
development in early life. Fetal and neonatal immune adaptations facilitate intrauterine …

[HTML][HTML] HLA-associated immune escape pathways in HIV-1 subtype B Gag, Pol and Nef proteins

ZL Brumme, M John, JM Carlson, CJ Brumme, D Chan… - PloS one, 2009 - journals.plos.org
Background Despite the extensive genetic diversity of HIV-1, viral evolution in response to
immune selective pressures follows broadly predictable mutational patterns. Sites and …

Additive contribution of HLA class I alleles in the immune control of HIV-1 infection

A Leslie, PC Matthews, J Listgarten, JM Carlson… - Journal of …, 2010 - Am Soc Microbiol
Previous studies have identified a central role for HLA-B alleles in influencing control of HIV
infection. An alternative possibility is that a small number of HLA-B alleles may have a very …