Physics of metabolic organization

M Jusup, T Sousa, T Domingos, V Labinac, N Marn… - Physics of life …, 2017 - Elsevier
We review the most comprehensive metabolic theory of life existing to date. A special focus
is given to the thermodynamic roots of this theory and to implications that the laws of physics …

The pros and cons of ecological risk assessment based on data from different levels of biological organization

JR Rohr, CJ Salice, RM Nisbet - Critical Reviews in Toxicology, 2016 - Taylor & Francis
Ecological risk assessment (ERA) is the process used to evaluate the safety of manufactured
chemicals to the environment. Here we review the pros and cons of ERA across levels of …

The AmP project: comparing species on the basis of dynamic energy budget parameters

GM Marques, S Augustine, K Lika… - PLoS computational …, 2018 - journals.plos.org
We developed new methods for parameter estimation-in-context and, with the help of 125
authors, built the AmP (Add-my-Pet) database of Dynamic Energy Budget (DEB) models …

Field tests of a general ectotherm niche model show how water can limit lizard activity and distribution

MR Kearney, SL Munns, D Moore… - Ecological …, 2018 - Wiley Online Library
Mechanistic forecasts of how species will respond to climate change are highly desired but
difficult to achieve. Because processes at different scales are explicit in such models, careful …

Balancing heat, water and nutrients under environmental change: a thermodynamic niche framework

MR Kearney, SJ Simpson, D Raubenheimer… - Functional …, 2013 - Wiley Online Library
Models of the regulatory behaviour of organisms are fundamental to a strong physiologically‐
based understanding of species' responses to global environmental change. Biophysical …

Predicting population dynamics from the properties of individuals: a cross-level test of dynamic energy budget theory

BT Martin, T Jager, RM Nisbet… - The American …, 2013 - journals.uchicago.edu
Individual-based models (IBMs) are increasingly used to link the dynamics of individuals to
higher levels of biological organization. Still, many IBMs are data hungry, species specific …

Farm‐scale models in fish aquaculture–An overview of methods and applications

K Chary, D Brigolin, MD Callier - Reviews in Aquaculture, 2022 - Wiley Online Library
Abstract Models are important tools to address sustainability challenges associated with
developing aquaculture at farm, regional and global scales. Farm‐scale models (FSMs) …

There's no harm in having too much: a comprehensive toolbox of methods in trophic ecology

N Majdi, N Hette-Tronquart, E Auclair, A Bec… - Food webs, 2018 - Elsevier
Trophic ecology is the study of feeding interactions and food acquisition by organisms. It
includes the causes and consequences of those behaviours at all levels of biological …

Fish condition as an indicator of stock status: Insights from condition index in a food‐limiting environment

I Haberle, L Bavčević, T Klanjscek - Fish and fisheries, 2023 - Wiley Online Library
Individual performance defines population dynamics. Condition index–a ratio of weight and
some function of length–has been louded as an indicator of individual performance and …

Biomechanics meets the ecological niche: the importance of temporal data resolution

MR Kearney, A Matzelle… - Journal of Experimental …, 2012 - journals.biologists.com
The emerging field of mechanistic niche modelling aims to link the functional traits of
organisms to their environments to predict survival, reproduction, distribution and …