[HTML][HTML] Symbiont-screener: a reference-free tool to separate host sequences from symbionts for error-prone long reads

M Xu, L Guo, Y Qi, C Shi, X Liu, J Chen… - Frontiers in Marine …, 2023 - frontiersin.org
Metagenomic sequencing facilitates large-scale constitutional analysis and functional
characterization of complex microbial communities without cultivation. Recent advances in …

Exploring high-quality microbial genomes by assembling short-reads with long-range connectivity

Z Zhang, J Xiao, H Wang, C Yang, Y Huang… - Nature …, 2024 - nature.com
Although long-read sequencing enables the generation of complete genomes for
unculturable microbes, its high cost limits the widespread adoption of long-read sequencing …

Assembly and analytical validation of a metagenomic reference catalog of human gut microbiota based on co-barcoding sequencing

Y Huang, P Jiang, Z Liang, R Chen, Z Yue… - Frontiers in …, 2023 - frontiersin.org
Human gut microbiota is associated with human health and disease, and is known to have
the second-largest genome in the human body. The microbiota genome is important for their …

AsmMix: an efficient haplotype-resolved hybrid de novo genome assembling pipeline

C Liu, P Wu, X Wu, X Zhao, F Chen, X Cheng… - Frontiers in …, 2024 - frontiersin.org
Accurate haplotyping facilitates distinguishing allele-specific expression, identifying cis-
regulatory elements, and characterizing genomic variations, which enables more precise …

Exploring high-quality microbial genomes by assembly of linked-reads with high barcode specificity using deep learning

Z Zhang, H Wang, C Yang, Y Huang, Z Yue, Y Chen… - bioRxiv, 2022 - biorxiv.org
De novo assembly of metagenomic sequencing data plays an essential role in elucidating
the genomes of unculturable microbes. Linked-reads, in which short-reads are linked …

Correction to “MetaTrass: A high‐quality metagenome assembler of the human gut microbiome by cobarcoding sequencing reads”

I Qi - ncbi.nlm.nih.gov
Correction to “MetaTrass: A high‐quality metagenome assembler of the human gut microbiome
by cobarcoding sequencing reads” - PMC Back to Top Skip to main content NIH NLM Logo …