Detecting balancing selection in genomes: limits and prospects

A Fijarczyk, W Babik - Molecular ecology, 2015 - Wiley Online Library
In spite of the long‐term interest in the process of balancing selection, its frequency in
genomes and evolutionary significance remain unclear due to challenges related to its …

Connecting genome structural variation with complex traits in crop plants

I Gabur, HS Chawla, RJ Snowdon… - Theoretical and applied …, 2019 - Springer
Key message Structural genome variation is a major determinant of useful trait diversity. We
describe how genome analysis methods are enabling discovery of trait-associated structural …

Ancient genomes revisit the ancestry of domestic and Przewalski's horses

C Gaunitz, A Fages, K Hanghøj, A Albrechtsen, N Khan… - Science, 2018 - science.org
The Eneolithic Botai culture of the Central Asian steppes provides the earliest
archaeological evidence for horse husbandry,~ 5500 years ago, but the exact nature of early …

[HTML][HTML] Genome sequencing of the extinct Eurasian wild aurochs, Bos primigenius, illuminates the phylogeography and evolution of cattle

SDE Park, DA Magee, PA McGettigan, MD Teasdale… - Genome biology, 2015 - Springer
Background Domestication of the now-extinct wild aurochs, Bos primigenius, gave rise to the
two major domestic extant cattle taxa, B. taurus and B. indicus. While previous genetic …

A decade of structural variants: description, history and methods to detect structural variation

G Escaramís, E Docampo… - Briefings in functional …, 2015 - academic.oup.com
In the past decade, the view on genomic structural variation (SV) has been changed
completely. SVs, previously considered rare events, are now recognized as the largest …

[HTML][HTML] A functional regulatory variant of MYH3 influences muscle fiber-type composition and intramuscular fat content in pigs

IC Cho, HB Park, JS Ahn, SH Han, JB Lee, HT Lim… - PLoS …, 2019 - journals.plos.org
Muscle development and lipid accumulation in muscle critically affect meat quality of
livestock. However, the genetic factors underlying myofiber-type specification and …

[HTML][HTML] A decade of pig genome sequencing: a window on pig domestication and evolution

MAM Groenen - Genetics Selection Evolution, 2016 - Springer
Insight into how genomes change and adapt due to selection addresses key questions in
evolutionary biology and in domestication of animals and plants by humans. In that regard …

Population genomics from pool sequencing

L Ferretti, SE Ramos‐Onsins… - Molecular …, 2013 - Wiley Online Library
Next generation sequencing of pooled samples is an effective approach for studies of
variability and differentiation in populations. In this paper we provide a comprehensive set of …

[HTML][HTML] Identification of selection signatures in livestock species

JJS Gouveia, MVGB Silva, SR Paiva… - Genetics and molecular …, 2014 - SciELO Brasil
The identification of regions that have undergone selection is one of the principal goals of
theoretical and applied evolutionary genetics. Such studies can also provide information …

[HTML][HTML] Copy number variation in the speciation of pigs: a possible prominent role for olfactory receptors

Y Paudel, O Madsen, HJ Megens, LAF Frantz, M Bosse… - BMC genomics, 2015 - Springer
Background Unraveling the genetic mechanisms associated with reduced gene flow
between genetically differentiated populations is key to understand speciation. Different …