Decoding post-translational modification crosstalk with proteomics

M Leutert, SW Entwisle, J Villén - Molecular & Cellular Proteomics, 2021 - ASBMB
Post-translational modification (PTM) of proteins allows cells to regulate protein functions,
transduce signals and respond to perturbations. PTMs expand protein functionality and …

Protein interaction networks in neurodegenerative diseases: From physiological function to aggregation

G Calabrese, C Molzahn, T Mayor - Journal of Biological Chemistry, 2022 - ASBMB
The accumulation of protein inclusions is linked to many neurodegenerative diseases that
typically develop in older individuals, due to a combination of genetic and environmental …

Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics

TW Kim, CH Park, CC Hsu, YW Kim, YW Ko… - The Plant …, 2023 - academic.oup.com
Elucidating enzyme–substrate relationships in posttranslational modification (PTM) networks
is crucial for understanding signal transduction pathways but is technically difficult because …

Strategies for monitoring cell–cell interactions

TJ Bechtel, T Reyes-Robles, OO Fadeyi… - Nature chemical …, 2021 - nature.com
Multicellular organisms depend on physical cell–cell interactions to control physiological
processes such as tissue formation, neurotransmission and immune response. These …

Engineering of ultraID, a compact and hyperactive enzyme for proximity-dependent biotinylation in living cells

L Kubitz, S Bitsch, X Zhao, K Schmitt, L Deweid… - Communications …, 2022 - nature.com
Proximity-dependent biotinylation (PDB) combined with mass spectrometry analysis has
established itself as a key technology to study protein-protein interactions in living cells. A …

Spatiotemporally-resolved mapping of RNA binding proteins via functional proximity labeling reveals a mitochondrial mRNA anchor promoting stress recovery

W Qin, SA Myers, DK Carey, SA Carr, AY Ting - Nature communications, 2021 - nature.com
Proximity labeling (PL) with genetically-targeted promiscuous enzymes has emerged as a
powerful tool for unbiased proteome discovery. By combining the spatiotemporal specificity …

Proximity labeling in plants

SL Xu, R Shrestha, SS Karunadasa… - Annual review of plant …, 2023 - annualreviews.org
Proteins are workhorses in the cell; they form stable and more often dynamic, transient
protein–protein interactions, assemblies, and networks and have an intimate interplay with …

Proximity‐dependent labeling methods for proteomic profiling in living cells: An update

JA Bosch, CL Chen, N Perrimon - Wiley Interdisciplinary …, 2021 - Wiley Online Library
Characterizing the proteome composition of organelles and subcellular regions of living
cells can facilitate the understanding of cellular organization as well as protein interactome …

EDF1 coordinates cellular responses to ribosome collisions

NK Sinha, A Ordureau, K Best, JA Saba, B Zinshteyn… - Elife, 2020 - elifesciences.org
Translation of aberrant mRNAs induces ribosomal collisions, thereby triggering pathways for
mRNA and nascent peptide degradation and ribosomal rescue. Here we use sucrose …

Genomics, proteomics, and metabolomics approaches to improve abiotic stress tolerance in tomato plant

B Naik, V Kumar, S Rizwanuddin, M Chauhan… - International Journal of …, 2023 - mdpi.com
To explore changes in proteins and metabolites under stress circumstances, genomics,
proteomics, and metabolomics methods are used. In-depth research over the previous ten …