mRNA capping: biological functions and applications

A Ramanathan, GB Robb, SH Chan - Nucleic acids research, 2016 - academic.oup.com
The 5′ m7G cap is an evolutionarily conserved modification of eukaryotic mRNA. Decades
of research have established that the m7G cap serves as a unique molecular module that …

Conventional and unconventional mechanisms for capping viral mRNA

E Decroly, F Ferron, J Lescar, B Canard - Nature Reviews Microbiology, 2012 - nature.com
In the eukaryotic cell, capping of mRNA 5′ ends is an essential structural modification that
allows efficient mRNA translation, directs pre-mRNA splicing and mRNA export from the …

Cap and cap‐binding proteins in the control of gene expression

I Topisirovic, YV Svitkin, N Sonenberg… - Wiley Interdisciplinary …, 2011 - Wiley Online Library
The 5′ mRNA cap structure is essential for efficient gene expression from yeast to human. It
plays a critical role in all aspects of the life cycle of an mRNA molecule. Capping occurs co …

Discovery of an essential nucleotidylating activity associated with a newly delineated conserved domain in the RNA polymerase-containing protein of all nidoviruses

KC Lehmann, A Gulyaeva… - Nucleic acids …, 2015 - academic.oup.com
RNA viruses encode an RNA-dependent RNA polymerase (RdRp) that catalyzes the
synthesis of their RNA (s). In the case of positive-stranded RNA viruses belonging to the …

Functional anthology of intrinsic disorder. 3. Ligands, post-translational modifications, and diseases associated with intrinsically disordered proteins

H Xie, S Vucetic, LM Iakoucheva… - Journal of proteome …, 2007 - ACS Publications
Currently, the understanding of the relationships between function, amino acid sequence,
and protein structure continues to represent one of the major challenges of the modern …

Chemoproteomic discovery of a human RNA ligase

Y Yuan, FM Stumpf, LA Schlor, OP Schmidt… - Nature …, 2023 - nature.com
RNA ligases are present across all forms of life. While enzymatic RNA ligation between 5′-
PO4 and 3′-OH termini is prevalent in viruses, fungi, and plants, such RNA ligases are yet …

Viroids: survivors from the RNA world?

R Flores, S Gago-Zachert, P Serra… - Annual review of …, 2014 - annualreviews.org
Because RNA can be a carrier of genetic information and a biocatalyst, there is a consensus
that it emerged before DNA and proteins, which eventually assumed these roles and …

Structural bias in T4 RNA ligase-mediated 3′-adapter ligation

F Zhuang, RT Fuchs, Z Sun, Y Zheng… - Nucleic acids …, 2012 - academic.oup.com
T4 RNA ligases are commonly used to attach adapters to RNAs, but large differences in
ligation efficiency make detection and quantitation problematic. We developed a ligation …

[HTML][HTML] Jumbo phages: a comparative genomic overview of core functions and adaptions for biological conflicts

L M. Iyer, V Anantharaman, A Krishnan, AM Burroughs… - Viruses, 2021 - mdpi.com
Jumbo phages have attracted much attention by virtue of their extraordinary genome size
and unusual aspects of biology. By performing a comparative genomics analysis of 224 …

[HTML][HTML] Nidovirus RNA polymerases: complex enzymes handling exceptional RNA genomes

CC Posthuma, AJW Te Velthuis, EJ Snijder - Virus research, 2017 - Elsevier
Coronaviruses and arteriviruses are distantly related human and animal pathogens that
belong to the order Nidovirales. Nidoviruses are characterized by their polycistronic plus …