Exploration of workflow management systems emerging features from users perspectives

R Mitchell, L Pottier, S Jacobs… - … Conference on Big …, 2019 - ieeexplore.ieee.org
There has been a recent emergence of new workflow applications focused on data analytics
and machine learning. This emergence has precipitated a change in the workflow …

An integrated toolkit for extensible and reproducible neuroscience

JK Matelsky, LM Rodriguez, D Xenes… - 2021 43rd Annual …, 2021 - ieeexplore.ieee.org
As neuroimagery datasets continue to grow in size, the complexity of data analyses can
require a detailed understanding and implementation of systems computer science for …

Intern: Integrated toolkit for extensible and reproducible neuroscience

J Matelsky, L Rodriguez, D Xenes, T Gion, R Hider Jr… - BiorXiv, 2020 - biorxiv.org
As neuroscience datasets continue to grow in size, the complexity of data analyses can
require a detailed understanding and implementation of systems computer science for …

In search of a brain microbiome: A machine learning search pipeline for electron microscopy images of brain tissue

JK Matelsky, C Shih, K Hijazi, EC Johnson - bioRxiv, 2022 - biorxiv.org
The healthy human brain has long been considered a sterile environment, with the blood
brain barrier preventing the formation of a bacterial brain microbiome. Recent electron …

NeuroKube: An Automated and Autoscaling Neuroimaging Reconstruction Framework using Cloud Native Computing and AI

M Madany, K Marcus, S Peltier… - … Conference on Big …, 2020 - ieeexplore.ieee.org
The Neuroscience domain stands out from the field of sciences for its dependence on the
study and characterization of complex, intertwining structures. Understanding the complexity …

Transfer learning analysis of image processing workflows for electron microscopy datasets

EC Johnson, LM Rodriguez… - 2019 53rd Asilomar …, 2019 - ieeexplore.ieee.org
Neuroscientists are collecting Electron Microscopy (EM) datasets at increasingly faster rates.
This modality offers an unprecedented map of brain structure at the resolution of individual …

Connecting neural reconstruction integrity (NRI) to graph metrics and biological priors

EP Reilly, EC Johnson, MJ Hughes… - Complex Networks XI …, 2020 - Springer
We previously introduced the Neural Reconstruction Integrity (NRI) metric as a measure of
how well the connectivity of the brain is measured in a neural circuit reconstruction, which …

Leveraging Tools from Autonomous Navigation for Rapid, Robust Neuron Connectivity

N Drenkow, J Joyce, J Matelsky, J Heiko… - … Image Computing and …, 2020 - Springer
As biological imaging datasets continue to grow in size, extracting information from large
image volumes presents a computationally intensive challenge. State-of-the-art algorithms …