[HTML][HTML] Small nucleolar RNAs tell a different tale

J Kufel, P Grzechnik - Trends in Genetics, 2019 - cell.com
Transcribing RNA Polymerase II interacts with multiple factors that orchestrate maturation
and stabilisation of messenger RNA. For the majority of noncoding RNAs, the polymerase …

Epithelial E-and P-cadherins: role and clinical significance in cancer

J Paredes, J Figueiredo, A Albergaria, P Oliveira… - … et Biophysica Acta (BBA …, 2012 - Elsevier
E-cadherin and P-cadherin are major contributors to cell–cell adhesion in epithelial tissues,
playing pivotal roles in important morphogenetic and differentiation processes during …

starBase v2. 0: decoding miRNA-ceRNA, miRNA-ncRNA and protein–RNA interaction networks from large-scale CLIP-Seq data

JH Li, S Liu, H Zhou, LH Qu, JH Yang - Nucleic acids research, 2014 - academic.oup.com
Although microRNAs (miRNAs), other non-coding RNAs (ncRNAs)(eg lncRNAs,
pseudogenes and circRNAs) and competing endogenous RNAs (ceRNAs) have been …

Ensembl 2015

F Cunningham, MR Amode, D Barrell… - Nucleic acids …, 2015 - academic.oup.com
Abstract Ensembl (http://www. ensembl. org) is a genomic interpretation system providing
the most up-to-date annotations, querying tools and access methods for chordates and key …

The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored

D Szklarczyk, A Franceschini, M Kuhn… - Nucleic acids …, 2010 - academic.oup.com
An essential prerequisite for any systems-level understanding of cellular functions is to
correctly uncover and annotate all functional interactions among proteins in the cell. Toward …

The evolution of gene expression levels in mammalian organs

D Brawand, M Soumillon, A Necsulea, P Julien… - Nature, 2011 - nature.com
Abstract Changes in gene expression are thought to underlie many of the phenotypic
differences between species. However, large-scale analyses of gene expression evolution …

Mapping identifiers for the integration of genomic datasets with the R/Bioconductor package biomaRt

S Durinck, PT Spellman, E Birney, W Huber - Nature protocols, 2009 - nature.com
Genomic experiments produce multiple views of biological systems, among them are DNA
sequence and copy number variation, and mRNA and protein abundance. Understanding …

Deep proteome and transcriptome mapping of a human cancer cell line

N Nagaraj, JR Wisniewski, T Geiger, J Cox… - Molecular systems …, 2011 - embopress.org
While the number and identity of proteins expressed in a single human cell type is currently
unknown, this fundamental question can be addressed by advanced mass spectrometry …

[HTML][HTML] International network of cancer genome projects

International Cancer Genome Consortium - Nature, 2010 - ncbi.nlm.nih.gov
Abstract The International Cancer Genome Consortium (ICGC) was launched to coordinate
large-scale cancer genome studies in tumors from 50 different cancer types and/or subtypes …

The Ecoresponsive Genome of Daphnia pulex

JK Colbourne, ME Pfrender, D Gilbert, WK Thomas… - Science, 2011 - science.org
We describe the draft genome of the microcrustacean Daphnia pulex, which is only 200
megabases and contains at least 30,907 genes. The high gene count is a consequence of …