A dynamical low-rank approach to solve the chemical master equation for biological reaction networks
Solving the chemical master equation is an indispensable tool in understanding the
behavior of biological and chemical systems. In particular, it is increasingly recognized that …
behavior of biological and chemical systems. In particular, it is increasingly recognized that …
Understanding how cells probe the world: a preliminary step towards modeling cell behavior?
P Bongrand - International Journal of Molecular Sciences, 2023 - mdpi.com
Cell biologists have long aimed at quantitatively modeling cell function. Recently, the
outstanding progress of high-throughput measurement methods and data processing tools …
outstanding progress of high-throughput measurement methods and data processing tools …
Maboss for HPC environments: implementations of the continuous time Boolean model simulator for large CPU clusters and GPU accelerators
Background Computational models in systems biology are becoming more important with
the advancement of experimental techniques to query the mechanistic details responsible …
the advancement of experimental techniques to query the mechanistic details responsible …
Automatic partitioning for the low-rank integration of stochastic Boolean reaction networks
L Einkemmer, J Mangott, M Prugger - arXiv preprint arXiv:2501.04157, 2025 - arxiv.org
Boolean reaction networks are an important tool in biochemistry for studying mechanisms in
the biological cell. However, the stochastic formulation of such networks requires the …
the biological cell. However, the stochastic formulation of such networks requires the …