Interactions between bacterial and phage communities in natural environments

A Chevallereau, BJ Pons, S van Houte… - Nature Reviews …, 2022 - nature.com
We commonly acknowledge that bacterial viruses (phages) shape the composition and
evolution of bacterial communities in nature and therefore have important roles in ecosystem …

Roles of intestinal Parabacteroides in human health and diseases

Y Cui, L Zhang, X Wang, Y Yi, Y Shan… - FEMS microbiology …, 2022 - academic.oup.com
The stability of gut microbiota is essential for the host's health. Parabacteroides spp., core
members of the human gut microbiota, have an average abundance of 1.27% in humans of …

A roadmap for genome-based phage taxonomy

D Turner, AM Kropinski, EM Adriaenssens - Viruses, 2021 - mdpi.com
Bacteriophage (phage) taxonomy has been in flux since its inception over four decades ago.
Genome sequencing has put pressure on the classification system and recent years have …

Parabacteroides distasonis: intriguing aerotolerant gut anaerobe with emerging antimicrobial resistance and pathogenic and probiotic roles in human health

JC Ezeji, DK Sarikonda, A Hopperton, HL Erkkila… - Gut …, 2021 - Taylor & Francis
Parabacteroides distasonis is the type strain for the genus Parabacteroides, a group of gram-
negative anaerobic bacteria that commonly colonize the gastrointestinal tract of numerous …

Taxonomy of prokaryotic viruses: 2018-2019 update from the ICTV Bacterial and Archaeal Viruses Subcommittee

EM Adriaenssens, MB Sullivan, P Knezevic… - Archives of …, 2020 - Springer
This article is a summary of the activities of the ICTV's Bacterial and Archaeal Viruses
Subcommittee for the years 2018 and 2019. Highlights include the creation of a new order …

Microviruses: A World Beyond phiX174

PC Kirchberger, H Ochman - Annual Review of Virology, 2023 - annualreviews.org
Two decades of metagenomic analyses have revealed that in many environments, small (∼
5 kb), single-stranded DNA phages of the family Microviridae dominate the virome. Although …

Towards quantitative viromics for both double-stranded and single-stranded DNA viruses

S Roux, NE Solonenko, VT Dang, BT Poulos… - PeerJ, 2016 - peerj.com
Background Viruses strongly influence microbial population dynamics and ecosystem
functions. However, our ability to quantitatively evaluate those viral impacts is limited to the …

Organizing the global diversity of microviruses

PC Kirchberger, ZA Martinez, H Ochman - Mbio, 2022 - Am Soc Microbiol
Microviruses encompass an astonishing array of small, single-stranded DNA phages that,
due to the surge in metagenomic surveys, are now known to be prevalent in most …

Diversity and potential host-interactions of viruses inhabiting deep-sea seamount sediments

M Yu, M Zhang, R Zeng, R Cheng, R Zhang… - Nature …, 2024 - nature.com
Seamounts are globally distributed across the oceans and form one of the major oceanic
biomes. Here, we utilized combined analyses of bulk metagenome and virome to study viral …

Phage therapy for crops: concepts, experimental and bioinformatics approaches to direct its application

JL Villalpando-Aguilar, G Matos-Pech… - International journal of …, 2022 - mdpi.com
Phage therapy consists of applying bacteriophages, whose natural function is to kill specific
bacteria. Bacteriophages are safe, evolve together with their host, and are environmentally …