Unambiguous identification of fungi: where do we stand and how accurate and precise is fungal DNA barcoding?

R Lücking, MC Aime, B Robbertse, AN Miller… - IMA fungus, 2020 - Springer
True fungi (Fungi) and fungus-like organisms (eg Mycetozoa, Oomycota) constitute the
second largest group of organisms based on global richness estimates, with around 3 …

Adapterama III: Quadruple-indexed, double/triple-enzyme RADseq libraries (2RAD/3RAD)

NJ Bayona-Vásquez, TC Glenn, TJ Kieran, TW Pierson… - PeerJ, 2019 - peerj.com
Molecular ecologists frequently use genome reduction strategies that rely upon restriction
enzyme digestion of genomic DNA to sample consistent portions of the genome from many …

Sex-Associated SNP Confirmation of Sex-Reversed Male Farmed Japanese Flounder Paralichthys olivaceus

M Maekawa, E Yoshii, Y Akase, H Huang… - Marine …, 2023 - Springer
Abstract Female Japanese flounder Paralichthys olivaceus grow more rapidly than the male.
The goal of all-female commercial production requires an efficient method of genetic sex …

Genome-wide RAD sequencing resolves the evolutionary history of serrate leaf Juniperus and reveals discordance with chloroplast phylogeny

KA Uckele, RP Adams, AE Schwarzbach… - Molecular Phylogenetics …, 2021 - Elsevier
Juniper (Juniperus) is an ecologically important conifer genus of the Northern Hemisphere,
the members of which are often foundational tree species of arid regions. The serrate leaf …

RAD sequencing resolves the phylogeny, taxonomy and biogeography of Trichophoreae despite a recent rapid radiation (Cyperaceae)

É Léveillé-Bourret, BH Chen… - Molecular phylogenetics …, 2020 - Elsevier
Trichophoreae is a nearly cosmopolitan Cyperaceae tribe that contains~ 17 species
displaying striking variation in size, inflorescence complexity, and perianth morphology …

[HTML][HTML] Genomic SNPs resolve the phylogeny of an ancient amphibian island radiation from the Seychelles

MB Sherlock, JW Streicher, DJ Gower… - Molecular Phylogenetics …, 2024 - Elsevier
Unusually for oceanic islands, the granitic Seychelles host multiple lineages of endemic
amphibians. This includes an ancient (> 63 million years old) radiation of eight caecilian …

Using target enrichment sequencing to study the higher-level phylogeny of the largest lichen-forming fungi family: Parmeliaceae (Ascomycota)

F Grewe, C Ametrano, TJ Widhelm, S Leavitt… - IMA fungus, 2020 - Springer
Parmeliaceae is the largest family of lichen-forming fungi with a worldwide distribution. We
used a target enrichment data set and a qualitative selection method for 250 out of 350 …

Systematics, biogeography and phylogenomics of northern bog lemmings (Cricetidae), cold-temperate rodents of conservation concern under global change

AG Hope, KM Headlee, ZH Olson… - Systematics and …, 2023 - Taylor & Francis
Northern bog lemmings, Mictomys (Synaptomys) borealis, are currently being assessed for
protections under the US Endangered Species Act. A major impediment to comprehensive …

Genomic selection for survival under naturally occurring Saprolegnia oomycete infection in farmed European whitefish Coregonus lavaretus

FCF Calboli, T Iso-Touru, O Bitz… - Journal of Animal …, 2023 - academic.oup.com
Saprolegnia oomycete infection causes serious economic losses and reduces fish health in
aquaculture. Genomic selection based on thousands of DNA markers is a powerful tool to …

High-throughput single nucleotide polymorphism genotyping reveals population structure and genetic diversity of tall fescue (Festuca arundinacea) populations

Z Shahabzadeh, R Darvishzadeh… - Crop and Pasture …, 2022 - CSIRO Publishing
Single nucleotide polymorphisms (SNPs) are the most abundant form of genetic variation in
eukaryote genomes and may be useful for selection of genetically distant parents for …