tRNA modifications: impact on structure and thermal adaptation

C Lorenz, CE Lünse, M Mörl - Biomolecules, 2017 - mdpi.com
Transfer RNAs (tRNAs) are central players in translation, functioning as adapter molecules
between the informational level of nucleic acids and the functional level of proteins. They …

Naturally occurring modified ribonucleosides

PJ McCown, A Ruszkowska, CN Kunkler… - Wiley …, 2020 - Wiley Online Library
The chemical identity of RNA molecules beyond the four standard ribonucleosides has
fascinated scientists since pseudouridine was characterized as the “fifth” ribonucleotide in …

RoboOligo: software for mass spectrometry data to support manual and de novo sequencing of post-transcriptionally modified ribonucleic acids

PJ Sample, KW Gaston, JD Alfonzo… - Nucleic acids …, 2015 - academic.oup.com
Ribosomal ribonucleic acid (RNA), transfer RNA and other biological or synthetic RNA
polymers can contain nucleotides that have been modified by the addition of chemical …

A crescendo of competent coding (c3) contains the Standard Genetic Code

M Yarus - RNA, 2022 - rnajournal.cshlp.org
The Standard Genetic Code (SGC) can arise by fusion of partial codes evolved in different
individuals, perhaps for differing prior tasks. Such code fragments can be unified into an …

Identification of a novel 5-aminomethyl-2-thiouridine methyltransferase in tRNA modification

G Cho, J Lee, J Kim - Nucleic Acids Research, 2023 - academic.oup.com
The uridine at the 34th position of tRNA, which is able to base pair with the 3′-end codon
on mRNA, is usually modified to influence many aspects of decoding properties during …

Mapping post-transcriptional modifications in Staphylococcus aureus tRNAs by nanoLC/MSMS

L Antoine, P Wolff, E Westhof, P Romby, S Marzi - Biochimie, 2019 - Elsevier
RNA modifications are involved in numerous biological processes. These modifications are
constitutive or modulated in response to adaptive processes and can impact RNA base …

yaaJ, the tRNA-Specific Adenosine Deaminase, Is Dispensable in Bacillus subtilis

A Soma, A Kubota, D Tomoe, Y Ikeuchi, F Kawamura… - Genes, 2023 - mdpi.com
Post-transcriptional modifications of tRNA are crucial for their core function. The inosine (I; 6-
deaminated adenosine) at the first position in the anticodon of tRNAArg (ICG) modulates the …

Genomic and evolutionary aspects of chloroplast tRNA in monocot plants

TK Mohanta, AL Khan, A Hashem, EFA Allah… - BMC Plant …, 2019 - Springer
Background Chloroplasts are one of the most indispensable organelles that make life forms
on the earth possible by their capacity to photosynthesize. These organelles possess a …

From prebiotics to probiotics: The evolution and functions of tRNA modifications

KM McKenney, JD Alfonzo - Life, 2016 - mdpi.com
All nucleic acids in cells are subject to post-transcriptional chemical modifications. These are
catalyzed by a myriad of enzymes with exquisite specificity and that utilize an often-exotic …

Identification and characterization of genes required for 5-hydroxyuridine synthesis in Bacillus subtilis and Escherichia coli tRNA

CT Lauhon - Journal of bacteriology, 2019 - Am Soc Microbiol
In bacteria, tRNAs that decode 4-fold degenerate family codons and have uridine at position
34 of the anticodon are typically modified with either 5-methoxyuridine (mo5U) or 5 …