[HTML][HTML] Addressing global ruminant agricultural challenges through understanding the rumen microbiome: past, present, and future

SA Huws, CJ Creevey, LB Oyama, I Mizrahi… - Frontiers in …, 2018 - frontiersin.org
The rumen is a complex ecosystem composed of anaerobic bacteria, protozoa, fungi,
methanogenic archaea and phages. These microbes interact closely to breakdown plant …

The role of the gut microbiome in cattle production and health: driver or passenger?

E O'Hara, ALA Neves, Y Song… - Annual review of animal …, 2020 - annualreviews.org
Ruminant production systems face significant challenges currently, driven by heightened
awareness of their negative environmental impact and the rapidly rising global population …

PICRUSt2: An improved and extensible approach for metagenome inference

GM Douglas, VJ Maffei, J Zaneveld, SN Yurgel… - BioRxiv, 2019 - biorxiv.org
One major limitation of microbial community marker gene sequencing is that it does not
provide direct information on the functional composition of sampled communities. Here, we …

[HTML][HTML] Tax4Fun2: prediction of habitat-specific functional profiles and functional redundancy based on 16S rRNA gene sequences

F Wemheuer, JA Taylor, R Daniel, E Johnston… - Environmental …, 2020 - Springer
Abstract Background Sequencing of 16S rRNA genes has become a powerful technique to
study microbial communities and their responses towards changing environmental …

[HTML][HTML] Inference-based accuracy of metagenome prediction tools varies across sample types and functional categories

S Sun, RB Jones, AA Fodor - Microbiome, 2020 - Springer
Background Despite recent decreases in the cost of sequencing, shotgun metagenome
sequencing remains more expensive compared with 16S rRNA amplicon sequencing …

Microbiome diversity and dysbiosis in aquaculture

S Infante‐Villamil, R Huerlimann… - Reviews in …, 2021 - Wiley Online Library
With the continuous growth of the human population and associated need for high‐quality
protein, the aquaculture sector will be required to increase significantly in productivity. This …

A microbial sea of possibilities: current knowledge and prospects for an improved understanding of the fish microbiome

TPRA Legrand, JW Wynne, LS Weyrich… - Reviews in …, 2020 - Wiley Online Library
The mucosal surfaces of fish represent an important barrier that supports and regulates a
diverse array of microbial assemblages and contributes to the overall health and fitness of …

Ruminal microbiome and microbial metabolome: effects of diet and ruminant host

CJ Newbold, E Ramos-Morales - Animal, 2020 - cambridge.org
The rumen contains a great diversity of prokaryotic and eukaryotic microorganisms that
allow the ruminant to utilize ligno-cellulose material and to convert non-protein nitrogen into …

[HTML][HTML] Rumen microbiome composition is altered in sheep divergent in feed efficiency

S McLoughlin, C Spillane, N Claffey, PE Smith… - Frontiers in …, 2020 - frontiersin.org
Rumen microbiome composition and functionality is linked to animal feed efficiency,
particularly for bovine ruminants. To investigate this in sheep, we compared rumen bacterial …

Gut microbiota alterations reveal potential gut–brain axis changes in polycystic ovary syndrome

Z Liang, N Di, L Li, D Yang - Journal of Endocrinological Investigation, 2021 - Springer
Purpose Polycystic ovary syndrome (PCOS) is a common heterogeneous endocrine
disorder companied with neuroendocrine and metabolic disorders. Gut microbiota has been …