Ancient pathogen genomics as an emerging tool for infectious disease research

MA Spyrou, KI Bos, A Herbig, J Krause - Nature Reviews Genetics, 2019 - nature.com
Over the past decade, a genomics revolution, made possible through the development of
high-throughput sequencing, has triggered considerable progress in the study of ancient …

The evolution and clinical impact of hepatitis B virus genome diversity

PA Revill, T Tu, HJ Netter, LKW Yuen… - Nature Reviews …, 2020 - nature.com
The global burden of hepatitis B virus (HBV) is enormous, with 257 million persons
chronically infected, resulting in more than 880,000 deaths per year worldwide. HBV exists …

Ten millennia of hepatitis B virus evolution

A Kocher, L Papac, R Barquera, FM Key, MA Spyrou… - Science, 2021 - science.org
Hepatitis B virus (HBV) has been infecting humans for millennia and remains a global health
problem, but its past diversity and dispersal routes are largely unknown. We generated HBV …

Measles virus and rinderpest virus divergence dated to the sixth century BCE

A Düx, S Lequime, LV Patrono, B Vrancken, S Boral… - Science, 2020 - science.org
Many infectious diseases are thought to have emerged in humans after the Neolithic
revolution. Although it is broadly accepted that this also applies to measles, the exact date of …

Mobility and social change: understanding the European Neolithic period after the archaeogenetic revolution

M Furholt - Journal of archaeological research, 2021 - Springer
This paper discusses and synthesizes the consequences of the archaeogenetic revolution to
our understanding of mobility and social change during the Neolithic period in Europe (6500 …

Nutrition and health in human evolution–past to present

KW Alt, A Al-Ahmad, JP Woelber - Nutrients, 2022 - mdpi.com
Anyone who wants to understand the biological nature of humans and their special
characteristics must look far back into evolutionary history. Today's way of life is drastically …

Prisoners of war—host adaptation and its constraints on virus evolution

P Simmonds, P Aiewsakun, A Katzourakis - Nature Reviews …, 2019 - nature.com
Recent discoveries of contemporary genotypes of hepatitis B virus and parvovirus B19 in
ancient human remains demonstrate that little genetic change has occurred in these viruses …

A 5,000-year-old hunter-gatherer already plagued by Yersinia pestis

J Susat, H Lübke, A Immel, U Brinker, A Macāne… - Cell reports, 2021 - cell.com
Summary A 5,000-year-old Yersinia pestis genome (RV 2039) is reconstructed from a hunter-
fisher-gatherer (5300–5050 cal BP) buried at Riņņukalns, Latvia. RV 2039 is the first in a …

A 5700 year-old human genome and oral microbiome from chewed birch pitch

TZT Jensen, J Niemann, KH Iversen, AK Fotakis… - Nature …, 2019 - nature.com
The rise of ancient genomics has revolutionised our understanding of human prehistory but
this work depends on the availability of suitable samples. Here we present a complete …

Reproducible, portable, and efficient ancient genome reconstruction with nf-core/eager

JAF Yates, TC Lamnidis, M Borry, AA Valtueña… - PeerJ, 2021 - peerj.com
The broadening utilisation of ancient DNA to address archaeological, palaeontological, and
biological questions is resulting in a rising diversity in the size of laboratories and scale of …