Extraction of chemical–protein interactions from the literature using neural networks and narrow instance representation

R Antunes, S Matos - Database, 2019 - academic.oup.com
The scientific literature contains large amounts of information on genes, proteins, chemicals
and their interactions. Extraction and integration of this information in curated knowledge …

Protein-protein interaction article classification: A knowledge-enriched self-attention convolutional neural network approach

L Luo, Z Yang, L Wang, Y Zhang, H Lin… - 2018 IEEE …, 2018 - ieeexplore.ieee.org
In this paper, we present a domain knowledge-enriched self-attention convolutional neural
network approach to classify PPI articles. First, two knowledge embeddings are proposed to …

KeSACNN: a protein-protein interaction article classification approach based on deep neural network

L Luo, Z Yang, L Wang, Y Zhang… - … Journal of Data …, 2019 - inderscienceonline.com
Automatic classification of protein-protein interaction (PPI) relevant articles from biomedical
literature is a crucial step for biological database curation since it can help reduce the …