Animal domestication in the era of ancient genomics

LAF Frantz, DG Bradley, G Larson… - Nature Reviews Genetics, 2020 - nature.com
The domestication of animals led to a major shift in human subsistence patterns, from a
hunter–gatherer to a sedentary agricultural lifestyle, which ultimately resulted in the …

Deleterious alleles in the context of domestication, inbreeding, and selection

M Bosse, HJ Megens, MFL Derks… - Evolutionary …, 2019 - Wiley Online Library
Each individual has a certain number of harmful mutations in its genome. These mutations
can lower the fitness of the individual carrying them, dependent on their dominance and …

863 genomes reveal the origin and domestication of chicken

MS Wang, M Thakur, MS Peng, YU Jiang, LAF Frantz… - Cell research, 2020 - nature.com
Despite the substantial role that chickens have played in human societies across the world,
both the geographic and temporal origins of their domestication remain controversial. To …

Resequencing of 145 landmark cultivars reveals asymmetric sub-genome selection and strong founder genotype effects on wheat breeding in China

C Hao, C Jiao, J Hou, T Li, H Liu, Y Wang, J Zheng… - Molecular plant, 2020 - cell.com
Controlled pedigrees and the multi-decade timescale of national crop plant breeding
programs offer a unique experimental context for examining how selection affects plant …

Evaluating the use of ABBA–BABA statistics to locate introgressed loci

SH Martin, JW Davey, CD Jiggins - Molecular biology and …, 2015 - academic.oup.com
Several methods have been proposed to test for introgression across genomes. One method
tests for a genome-wide excess of shared derived alleles between taxa using Patterson's D …

Introgressing the Aegilops tauschii genome into wheat as a basis for cereal improvement

Y Zhou, S Bai, H Li, G Sun, D Zhang, F Ma, X Zhao… - Nature Plants, 2021 - nature.com
Increasing crop production is necessary to feed the world's expanding population, and crop
breeders often utilize genetic variations to improve crop yield and quality. However, the …

Evidence of long-term gene flow and selection during domestication from analyses of Eurasian wild and domestic pig genomes

LAF Frantz, JG Schraiber, O Madsen, HJ Megens… - Nature …, 2015 - nature.com
Traditionally, the process of domestication is assumed to be initiated by humans, involve few
individuals and rely on reproductive isolation between wild and domestic forms. We …

Pervasive introgression facilitated domestication and adaptation in the Bos species complex

DD Wu, XD Ding, S Wang, JM Wójcik… - Nature ecology & …, 2018 - nature.com
Species of the Bos genus, including taurine cattle, zebu, gayal, gaur, banteng, yak, wisent
and bison, have been domesticated at least four times and have been an important source …

Efficacy of the porcine species in biomedical research

K Gutierrez, N Dicks, WG Glanzner, LB Agellon… - Frontiers in …, 2015 - frontiersin.org
Since domestication, pigs have been used extensively in agriculture and kept as companion
animals. More recently they have been used in biomedical research, given they share many …

Ancient pigs reveal a near-complete genomic turnover following their introduction to Europe

LAF Frantz, J Haile, AT Lin, A Scheu… - Proceedings of the …, 2019 - National Acad Sciences
Archaeological evidence indicates that pig domestication had begun by∼ 10,500 y before
the present (BP) in the Near East, and mitochondrial DNA (mtDNA) suggests that pigs …