Conserved DNA methyltransferases: a window into fundamental mechanisms of epigenetic regulation in bacteria

PH Oliveira, G Fang - Trends in microbiology, 2021 - cell.com
An increasing number of studies have reported that bacterial DNA methylation has important
functions beyond the roles in restriction-modification systems, including the ability of …

[HTML][HTML] History and future perspectives on the discipline of quantitative systems pharmacology modeling and its applications

K Azer, CD Kaddi, JS Barrett, JPF Bai… - Frontiers in …, 2021 - frontiersin.org
Mathematical biology and pharmacology models have a long and rich history in the fields of
medicine and physiology, impacting our understanding of disease mechanisms and the …

Comprehensive Essentiality Analysis of the Mycobacterium tuberculosis Genome via Saturating Transposon Mutagenesis

MA DeJesus, ER Gerrick, W Xu, SW Park, JE Long… - MBio, 2017 - Am Soc Microbiol
For decades, identifying the regions of a bacterial chromosome that are necessary for
viability has relied on mapping integration sites in libraries of random transposon mutants to …

[HTML][HTML] In silico analysis of epitope-based vaccine candidate against tuberculosis using reverse vaccinology

S Bibi, I Ullah, B Zhu, M Adnan, R Liaqat, WB Kong… - Scientific reports, 2021 - nature.com
Tuberculosis (TB) kills more individuals in the world than any other disease, and a threat
made direr by the coverage of drug-resistant strains of Mycobacterium tuberculosis (Mtb) …

Host-pathogen genetic interactions underlie tuberculosis susceptibility in genetically diverse mice

CM Smith, RE Baker, MK Proulx, BB Mishra, JE Long… - Elife, 2022 - elifesciences.org
The outcome of an encounter with Mycobacterium tuberculosis (Mtb) depends on the
pathogen's ability to adapt to the variable immune pressures exerted by the host …

Revealing 29 sets of independently modulated genes in Staphylococcus aureus, their regulators, and role in key physiological response

S Poudel, H Tsunemoto, Y Seif… - Proceedings of the …, 2020 - National Acad Sciences
The ability of Staphylococcus aureus to infect many different tissue sites is enabled, in part,
by its transcriptional regulatory network (TRN) that coordinates its gene expression to …

Nucleoid-associated proteins shape chromatin structure and transcriptional regulation across the bacterial kingdom

HM Amemiya, J Schroeder, PL Freddolino - Transcription, 2021 - Taylor & Francis
Genome architecture has proven to be critical in determining gene regulation across almost
all domains of life. While many of the key components and mechanisms of eukaryotic …

Global transcriptional regulatory network for Escherichia coli robustly connects gene expression to transcription factor activities

X Fang, A Sastry, N Mih, D Kim, J Tan… - Proceedings of the …, 2017 - National Acad Sciences
Transcriptional regulatory networks (TRNs) have been studied intensely for> 25 y. Yet, even
for the Escherichia coli TRN—probably the best characterized TRN—several questions …

[HTML][HTML] Genetically encoded transcriptional plasticity underlies stress adaptation in Mycobacterium tuberculosis

C Bei, J Zhu, PH Culviner, M Gan, EJ Rubin… - Nature …, 2024 - nature.com
Transcriptional regulation is a critical adaptive mechanism that allows bacteria to respond to
changing environments, yet the concept of transcriptional plasticity (TP)–the variability of …

N-methylation of a bactericidal compound as a resistance mechanism in Mycobacterium tuberculosis

T Warrier, K Kapilashrami, A Argyrou… - Proceedings of the …, 2016 - National Acad Sciences
The rising incidence of antimicrobial resistance (AMR) makes it imperative to understand the
underlying mechanisms. Mycobacterium tuberculosis (Mtb) is the single leading cause of …