Both natural ecosystems and biochemical reaction networks involve populations of
heterogeneous agents whose cooperative and competitive interactions lead to a rich …

We delve into growing open chemical reaction systems (CRSs) characterized by
autocatalytic reactions within a variable volume, which changes in response to these …

Understanding the emergent behavior of chemical reaction networks (CRNs) is a
fundamental aspect of biology and its origin from inanimate matter. A closed CRN …

By flux analysis one generically indicates a class of constraint-based approaches to the
study of biochemical reaction networks concerned with the calculation of the flux …

In this work we introduce a novel weighted message-passing algorithm based on the cavity
method for estimating volume-related properties of random polytopes, properties which are …

Characterizing the capabilities, key dependencies, and response to perturbations of
genome‐scale metabolic networks is a basic problem with important applications. A key …

We review recent work on the statistical mechanics of Von Neumann's growth model and
discuss its application to cellular metabolic networks. In this context, we present a detailed …

The analysis of non-equilibrium steady states of biochemical reaction networks relies on
finding the configurations of fluxes and chemical potentials satisfying stoichiometric (mass …

We study the solutions of von Neumann's expanding model with reversible processes for an
infinite reaction network. We show that, contrary to the irreversible case, the solution space …

Characterizing the capabilities, criticalities and response to perturbations of genome-scale
metabolic networks is a basic problem with important applications. A key question concerns …