An FPGA implementation of high throughput stochastic simulator for large-scale biochemical systems

M Yoshimi, Y Osana, Y Iwaoka… - … Conference on Field …, 2006 - ieeexplore.ieee.org
Stochastic simulation of biochemical systems has become one of major approaches to study
life processes as system, yet is a computational challenge to run the simulation due to its …

ReCSiP: An FPGA‐based general‐purpose biochemical simulator

Y Osana, M Yoshimi, Y Iwaoka, T Kojima… - … in Japan (Part II …, 2007 - Wiley Online Library
Mathematical modeling and simulation of cellular systems are essential to modern biological
researches. However, simulating with software‐based simulators on general‐purpose …

The design of scalable stochastic biochemical simulator on fpga

M Yoshimi, Y Osana, Y Iwaoka… - … Conference on Field …, 2005 - ieeexplore.ieee.org
Biochemical simulations including whole-cell models require high performance computing
systems. Reconfigurable systems are expected to be an alternative solution for conventional …

An FPGA-based, multi-model simulation method for biochemical systems

Y Osana, T Fukushima, M Yoshimi… - 19th IEEE …, 2005 - ieeexplore.ieee.org
Modeling and simulation of a cellular system on computers are now becoming an essential
process in biological researches. However, modern PCs can't provide enough performance …

Toward ubiquitous mapreduce processing

I Satoh - 2016 15th International Conference on Ubiquitous …, 2016 - ieeexplore.ieee.org
Ubiquitous computing environments generate a large amount of data at the edges of
networks, eg, sensors, which measure or monitor the real world. To analyze such data, we …

[PDF][PDF] NAOSITE: Nagasaki University's Academic Output SITE

Y Sakai, K Yamanouchi, K Ohashi, M Koike, R Utoh… - Biomaterials, 2015 - core.ac.uk
Abstract 1 Subcutaneous liver tissue engineering is an attractive and minimally invasive
approach used 2 for curative treat hepatic failure and inherited liver diseases. However, graft …

[PDF][PDF] Short Biography

H Amano - Citeseer
Hideharu Amano received the Ph. D degree from Keio University, Japan in 1986 under Prof.
Hideo Aiso's supervision.. From 1985, he was a research associate of department of electric …

[PDF][PDF] A study on Monte-Carlo biochemical simulation for field-programmable gate arrays

M Yoshimi - 2009 - comp.lab.uec.ac.jp
Since 1970s, many biologists and computer scientists have been studying various approach
methodologies to simulate chain chemical reactions inside living cells using computers …

FPGA を用いた汎用生化学シミュレータReCSiP

長名保範, 吉見真聡, 岩岡洋, 小嶋利紀… - 電子情報通信学会 …, 2006 - search.ieice.org
細胞内部の生化学反応を数理モデルとして記述し, シミュレーションを行うことで生命現象をシステム
として理解しようとする試みが盛んになっている. しかしながら, 汎用のマイクロプロセッサで得られる …

ストリームアプリケーション向け大規模FPGA アレイCUBE の性能評価

吉見真聡, 西川由理, 天野英晴, 三木光範… - 情報処理学会論文誌 …, 2010 - ipsj.ixsq.nii.ac.jp
論文抄録 本論文では, 512 個の FPGA から構成される 1 次元接続型 FPGA アレイ CUBE
の性能評価を目的に, 代表的なストリームアルゴリズムである文字列編集距離の並列アルゴリズム …