Applying next-generation sequencing to track falciparum malaria in sub-Saharan Africa

SK Tessema, J Raman, CW Duffy, DS Ishengoma… - Malaria journal, 2019 - Springer
Next-generation sequencing (NGS) technologies are increasingly being used to address a
diverse range of biological and epidemiological questions. The current understanding of …

Dissecting malaria biology and epidemiology using population genetics and genomics

S Auburn, AE Barry - International journal for parasitology, 2017 - Elsevier
Molecular approaches have an increasingly recognized utility in surveillance of malaria
parasite populations, not only in defining prevalence and incidence with higher sensitivity …

Using parasite genetic and human mobility data to infer local and cross-border malaria connectivity in Southern Africa

S Tessema, A Wesolowski, A Chen, M Murphy… - Elife, 2019 - elifesciences.org
Local and cross-border importation remain major challenges to malaria elimination and are
difficult to measure using traditional surveillance data. To address this challenge, we …

Drug resistance and vaccine target surveillance of Plasmodium falciparum using nanopore sequencing in Ghana

ST Girgis, E Adika, FE Nenyewodey… - Nature …, 2023 - nature.com
Malaria results in over 600,000 deaths annually, with the highest burden of deaths in young
children living in sub-Saharan Africa. Molecular surveillance can provide important …

Quantifying connectivity between local Plasmodium falciparum malaria parasite populations using identity by descent

AR Taylor, SF Schaffner, GC Cerqueira… - PLoS …, 2017 - journals.plos.org
With the rapidly increasing abundance and accessibility of genomic data, there is a growing
interest in using population genetic approaches to characterize fine-scale dispersal of …

Population genetic correlates of declining transmission in a human pathogen

SC Nkhoma, S Nair, S Al‐Saai, E Ashley… - Molecular …, 2013 - Wiley Online Library
Pathogen control programs provide a valuable, but rarely exploited, opportunity to directly
examine the relationship between population decline and population genetics. We …

[HTML][HTML] Controlled human malaria infection of Tanzanians by intradermal injection of aseptic, purified, cryopreserved Plasmodium falciparum sporozoites

S Shekalaghe, M Rutaihwa, PF Billingsley… - The American journal …, 2014 - ncbi.nlm.nih.gov
Controlled human malaria infection (CHMI) by mosquito bite has been used to assess anti-
malaria interventions in> 1,500 volunteers since development of methods for infecting …

THE REAL McCOIL: A method for the concurrent estimation of the complexity of infection and SNP allele frequency for malaria parasites

HH Chang, CJ Worby, A Yeka… - PLoS computational …, 2017 - journals.plos.org
As many malaria-endemic countries move towards elimination of Plasmodium falciparum,
the most virulent human malaria parasite, effective tools for monitoring malaria epidemiology …

Genome-Wide Analysis of Selection on the Malaria Parasite Plasmodium falciparum in West African Populations of Differing Infection Endemicity

VA Mobegi, CW Duffy… - Molecular Biology …, 2014 - academic.oup.com
Locally varying selection on pathogens may be due to differences in drug pressure, host
immunity, transmission opportunities between hosts, or the intensity of between-genotype …

Mapping malaria by combining parasite genomic and epidemiologic data

A Wesolowski, AR Taylor, HH Chang, R Verity… - BMC medicine, 2018 - Springer
Background Recent global progress in scaling up malaria control interventions has revived
the goal of complete elimination in many countries. Decreasing transmission intensity …