Tuning the ribosome: the influence of rRNA modification on eukaryotic ribosome biogenesis and function

KE Sloan, AS Warda, S Sharma, KD Entian… - RNA biology, 2017 - Taylor & Francis
ABSTRACT rRNAs are extensively modified during their transcription and subsequent
maturation in the nucleolus, nucleus and cytoplasm. RNA modifications, which are installed …

An overview of pre‐ribosomal RNA processing in eukaryotes

AK Henras, C Plisson‐Chastang… - Wiley …, 2015 - Wiley Online Library
Ribosomal RNAs are the most abundant and universal noncoding RNAs in living organisms.
In eukaryotes, three of the four ribosomal RNAs forming the 40S and 60S subunits are borne …

Eukaryotic ribosome biogenesis at a glance

E Thomson, S Ferreira-Cerca… - Journal of cell …, 2013 - journals.biologists.com
Ribosomes play a pivotal role in the molecular life of every cell. Moreover, synthesis of
ribosomes is one of the most energetically demanding of all cellular processes. In eukaryotic …

Mapping in vivo protein-RNA interactions at single-nucleotide resolution from HITS-CLIP data

C Zhang, RB Darnell - Nature biotechnology, 2011 - nature.com
Mammalian RNA complexity is regulated through interactions of RNA-binding proteins
(RBPs) with their target transcripts. High-throughput sequencing together with UV …

Mapping Argonaute and conventional RNA-binding protein interactions with RNA at single-nucleotide resolution using HITS-CLIP and CIMS analysis

MJ Moore, C Zhang, EC Gantman, A Mele… - Nature protocols, 2014 - nature.com
The identification of sites where RNA-binding proteins (RNABPs) interact with target RNAs
opens the door to understanding the vast complexity of RNA regulation. UV cross-linking …

Understanding splicing regulation through RNA splicing maps

JT Witten, J Ule - Trends in Genetics, 2011 - cell.com
Alternative splicing is a highly regulated process that greatly increases the proteome
diversity and plays an important role in cellular differentiation and disease. Interactions …

Defining the RNA interactome by total RNA‐associated protein purification

V Shchepachev, S Bresson, C Spanos… - Molecular systems …, 2019 - embopress.org
The RNA binding proteome (RBP ome) was previously investigated using UV crosslinking
and purification of poly (A)‐associated proteins. However, most cellular transcripts are not …

Molecular architecture of the 90S small subunit pre-ribosome

Q Sun, X Zhu, J Qi, W An, P Lan, D Tan, R Chen… - Elife, 2017 - elifesciences.org
Eukaryotic small ribosomal subunits are first assembled into 90S pre-ribosomes. The
complete 90S is a gigantic complex with a molecular mass of approximately five …

Ribosome Assembly Factors Prevent Premature Translation Initiation by 40S Assembly Intermediates

BS Strunk, CR Loucks, M Su, H Vashisth, S Cheng… - Science, 2011 - science.org
Ribosome assembly in eukaryotes requires approximately 200 essential assembly factors
(AFs) and occurs through ordered events that initiate in the nucleolus and culminate in the …

Transcriptome-wide analysis of exosome targets

C Schneider, G Kudla, W Wlotzka, A Tuck, D Tollervey - Molecular cell, 2012 - cell.com
The exosome plays major roles in RNA processing and surveillance but the in vivo target
range and substrate acquisition mechanisms remain unclear. Here we apply in vivo RNA …