Lineage tracing in humans enabled by mitochondrial mutations and single-cell genomics

LS Ludwig, CA Lareau, JC Ulirsch, E Christian, C Muus… - Cell, 2019 - cell.com
Lineage tracing provides key insights into the fate of individual cells in complex organisms.
Although effective genetic labeling approaches are available in model systems, in humans …

The human cell atlas white paper

A Regev, S Teichmann, O Rozenblatt-Rosen… - arXiv preprint arXiv …, 2018 - arxiv.org
The Human Cell Atlas (HCA) will be made up of comprehensive reference maps of all
human cells-the fundamental units of life-as a basis for understanding fundamental human …

Short tandem repeat stutter model inferred from direct measurement of in vitro stutter noise

O Raz, T Biezuner, A Spiro, S Amir, L Milo… - Nucleic acids …, 2019 - academic.oup.com
Short tandem repeats (STRs) are polymorphic genomic loci valuable for various applications
such as research, diagnostics and forensics. However, their polymorphic nature also …

Monitoring genotypic and phenotypic progression of systemic melanoma by cell lineage tree analysis and for molecular disease staging

J Greindl-Junghans - 2022 - epub.uni-regensburg.de
A recent study on metastatic seeding in melanomas showed that lymphatic dissemination
occurs very early. Disseminated cancer cells (DCCs) of melanoma patients can leave the …

Comparing Phylogenetic Approaches to Reconstructing Cell Lineage From Microsatellites With Missing Data

AM Lyne, L Perié - IEEE/ACM Transactions on Computational …, 2020 - ieeexplore.ieee.org
Due to the imperfect fidelity of DNA replication, somatic cells acquire DNA mutations at each
division which record their lineage history. Microsatellites, tandem repeats of DNA …

Lineage tracing using mitochondrial genome mutations and single cell genomics

LS Ludwig, CA Lareau, JC Ulirsch, A Regev… - US Patent App. 17 …, 2021 - Google Patents
Embodiments disclosed herein provide methods of using somatic mutations in mitochondrial
genomes to retrospectively infer cell lineages in native contexts and to serve as genetic …

Lineage tracing using mitochondrial genome mutations and single cell genomics

JC ULIRSCH, A Regev, CA LAREAU, LS LUDWIG… - 2019 - Google Patents
the present invention provides for a method of determining a lineage and/or clonal structure
of single cells in a multicellular eukaryotic organism comprising: detecting mutations in …

Computational development of high-throughput cell-lineage analysis focusing on characterization and modeling of somatic mutations

NC Ilani - 2018 - search.proquest.com
Organism cells proliferate and die to build, maintain, renew and repair it. The cellular history
of an organism up to any point in time can be captured by a cell lineage tree in which …