Long-read human genome sequencing and its applications

GA Logsdon, MR Vollger, EE Eichler - Nature Reviews Genetics, 2020 - nature.com
Over the past decade, long-read, single-molecule DNA sequencing technologies have
emerged as powerful players in genomics. With the ability to generate reads tens to …

Moving beyond P values: data analysis with estimation graphics

J Ho, T Tumkaya, S Aryal, H Choi, A Claridge-Chang - Nature methods, 2019 - nature.com
To the Editor—For at least 77 years, the limitations of null-hypothesis significance testing
(NHST) have been discussed, without agreement on a suitable alternative 1, 2. Estimation …

[PDF][PDF] librosa: Audio and music signal analysis in python.

B McFee, C Raffel, D Liang, DPW Ellis, M McVicar… - SciPy, 2015 - academia.edu
This document describes version 0.4. 0 of librosa: a Python package for audio and music
signal processing. At a high level, librosa provides implementations of a variety of common …

An analysis of SARS-CoV-2 viral load by patient age

TC Jones, B Mühlemann, T Veith, G Biele… - MedRxiv, 2020 - medrxiv.org
As children are under-represented in current studies aiming to analyse transmission of
SARS-coronavirus 2 (SARS-CoV-2), their contribution to transmission is unclear. Viral load …

Connectome-based reservoir computing with the conn2res toolbox

LE Suárez, A Mihalik, F Milisav, K Marshall, M Li… - Nature …, 2024 - nature.com
The connection patterns of neural circuits form a complex network. How signaling in these
circuits manifests as complex cognition and adaptive behaviour remains the central question …

SuperNNova: an open-source framework for Bayesian, neural network-based supernova classification

A Möller, T de Boissière - Monthly Notices of the Royal …, 2020 - academic.oup.com
We introduce SuperNNova, an open-source supernova photometric classification framework
that leverages recent advances in deep neural networks. Our core algorithm is a recurrent …

Phospholipid removal for enhanced chemical exposomics in human plasma

K Sdougkou, H Xie, S Papazian… - Environmental …, 2023 - ACS Publications
The challenge of chemical exposomics in human plasma is the 1000-fold concentration gap
between endogenous substances and environmental pollutants. Phospholipids are the …

Virus-inclusive single-cell RNA sequencing reveals the molecular signature of progression to severe dengue

F Zanini, ML Robinson, D Croote… - Proceedings of the …, 2018 - National Acad Sciences
Dengue virus (DENV) infection can result in severe complications. However, the
understanding of the molecular correlates of severity is limited, partly due to difficulties in …

Complete element abundances of nine stars in the r-process galaxy Reticulum II

AP Ji, A Frebel, JD Simon, A Chiti - The Astrophysical Journal, 2016 - iopscience.iop.org
We present chemical abundances derived from high-resolution Magellan/Magellan Inamori
Kyocera Echelle spectra of the nine brightest known red giant members of the ultra-faint …

Predicting microbial growth in a mixed culture from growth curve data

Y Ram, E Dellus-Gur, M Bibi… - Proceedings of the …, 2019 - National Acad Sciences
Determining the fitness of specific microbial genotypes has extensive application in
microbial genetics, evolution, and biotechnology. While estimates from growth curves are …