Inferring functional connections between neurons

IH Stevenson, JM Rebesco, LE Miller… - Current opinion in …, 2008 - Elsevier
A central question in neuroscience is how interactions between neurons give rise to
behavior. In many electrophysiological experiments, the activity of a set of neurons is …

Spatio-temporal correlations and visual signalling in a complete neuronal population

JW Pillow, J Shlens, L Paninski, A Sher, AM Litke… - Nature, 2008 - nature.com
Statistical dependencies in the responses of sensory neurons govern both the amount of
stimulus information conveyed and the means by which downstream neurons can extract it …

An overview of bayesian methods for neural spike train analysis

Z Chen - Computational intelligence and neuroscience, 2013 - Wiley Online Library
Neural spike train analysis is an important task in computational neuroscience which aims to
understand neural mechanisms and gain insights into neural circuits. With the advancement …

Model-based decoding, information estimation, and change-point detection techniques for multineuron spike trains

JW Pillow, Y Ahmadian, L Paninski - Neural computation, 2011 - direct.mit.edu
One of the central problems in systems neuroscience is to understand how neural spike
trains convey sensory information. Decoding methods, which provide an explicit means for …

A Bayesian approach for inferring neuronal connectivity from calcium fluorescent imaging data

Y Mishchencko, JT Vogelstein, L Paninski - The Annals of Applied Statistics, 2011 - JSTOR
Deducing the structure of neural circuits is one of the central problems of modern
neuroscience. Recently-introduced calcium fluorescent imaging methods permit …

Modeling the impact of common noise inputs on the network activity of retinal ganglion cells

M Vidne, Y Ahmadian, J Shlens, JW Pillow… - Journal of computational …, 2012 - Springer
Synchronized spontaneous firing among retinal ganglion cells (RGCs), on timescales faster
than visual responses, has been reported in many studies. Two candidate mechanisms of …

Bayesian inference of functional connectivity and network structure from spikes

IH Stevenson, JM Rebesco… - … on Neural Systems …, 2008 - ieeexplore.ieee.org
Current multielectrode techniques enable the simultaneous recording of spikes from
hundreds of neurons. To study neural plasticity and network structure it is desirable to infer …

Rewiring neural interactions by micro-stimulation

JM Rebesco, IH Stevenson, KP Körding… - Frontiers in systems …, 2010 - frontiersin.org
Plasticity is a crucial component of normal brain function and a critical mechanism for
recovery from injury. In vitro, associative pairing of presynaptic spiking and stimulus-induced …

Efficient" shotgun" inference of neural connectivity from highly sub-sampled activity data

D Soudry, S Keshri, P Stinson, M Oh… - PLoS computational …, 2015 - journals.plos.org
Inferring connectivity in neuronal networks remains a key challenge in statistical
neuroscience. The “common input” problem presents a major roadblock: it is difficult to …

Inferring input nonlinearities in neural encoding models

MB Ahrens, L Paninski, M Sahani - Network: Computation in Neural …, 2008 - Taylor & Francis
We describe a class of models that predict how the instantaneous firing rate of a neuron
depends on a dynamic stimulus. The models utilize a learnt pointwise nonlinear transform of …