Deep learning methods for molecular representation and property prediction

Z Li, M Jiang, S Wang, S Zhang - Drug Discovery Today, 2022 - Elsevier
Highlights•The deep learning method could effectively represent the molecular structure and
predict molecular property through diversified models.•One, two, and three-dimensional …

[HTML][HTML] Battery safety: Machine learning-based prognostics

J Zhao, X Feng, Q Pang, M Fowler, Y Lian… - Progress in Energy and …, 2024 - Elsevier
Lithium-ion batteries play a pivotal role in a wide range of applications, from electronic
devices to large-scale electrified transportation systems and grid-scale energy storage …

Uni-mol: A universal 3d molecular representation learning framework

G Zhou, Z Gao, Q Ding, H Zheng, H Xu, Z Wei, L Zhang… - 2023 - chemrxiv.org
Molecular representation learning (MRL) has gained tremendous attention due to its critical
role in learning from limited supervised data for applications like drug design. In most MRL …

Knowledge graph-enhanced molecular contrastive learning with functional prompt

Y Fang, Q Zhang, N Zhang, Z Chen, X Zhuang… - Nature Machine …, 2023 - nature.com
Deep learning models can accurately predict molecular properties and help making the
search for potential drug candidates faster and more efficient. Many existing methods are …

Large-scale chemical language representations capture molecular structure and properties

J Ross, B Belgodere, V Chenthamarakshan… - Nature Machine …, 2022 - nature.com
Abstract Models based on machine learning can enable accurate and fast molecular
property predictions, which is of interest in drug discovery and material design. Various …

One transformer can understand both 2d & 3d molecular data

S Luo, T Chen, Y Xu, S Zheng, TY Liu… - The Eleventh …, 2022 - openreview.net
Unlike vision and language data which usually has a unique format, molecules can naturally
be characterized using different chemical formulations. One can view a molecule as a 2D …

Enhancing activity prediction models in drug discovery with the ability to understand human language

P Seidl, A Vall, S Hochreiter… - … on Machine Learning, 2023 - proceedings.mlr.press
Activity and property prediction models are the central workhorses in drug discovery and
materials sciences, but currently, they have to be trained or fine-tuned for new tasks. Without …

Count-based morgan fingerprint: a more efficient and interpretable molecular representation in developing machine learning-based predictive regression models for …

S Zhong, X Guan - Environmental Science & Technology, 2023 - ACS Publications
In this study, we introduce the count-based Morgan fingerprint (C-MF) to represent chemical
structures of contaminants and develop machine learning (ML)-based predictive models for …

Few-shot molecular property prediction via hierarchically structured learning on relation graphs

W Ju, Z Liu, Y Qin, B Feng, C Wang, Z Guo, X Luo… - Neural Networks, 2023 - Elsevier
This paper studies few-shot molecular property prediction, which is a fundamental problem
in cheminformatics and drug discovery. More recently, graph neural network based model …

Geomgcl: Geometric graph contrastive learning for molecular property prediction

S Li, J Zhou, T Xu, D Dou, H Xiong - … of the AAAI conference on artificial …, 2022 - ojs.aaai.org
Recently many efforts have been devoted to applying graph neural networks (GNNs) to
molecular property prediction which is a fundamental task for computational drug and …