The global ascendency of OXA-48-type carbapenemases

JDD Pitout, G Peirano, MM Kock… - Clinical microbiology …, 2019 - Am Soc Microbiol
Surveillance studies have shown that OXA-48-like carbapenemases are the most common
carbapenemases in Enterobacterales in certain regions of the world and are being …

SCENIC+: single-cell multiomic inference of enhancers and gene regulatory networks

C Bravo González-Blas, S De Winter, G Hulselmans… - Nature …, 2023 - nature.com
Joint profiling of chromatin accessibility and gene expression in individual cells provides an
opportunity to decipher enhancer-driven gene regulatory networks (GRNs). Here we present …

[HTML][HTML] Spatial proteogenomics reveals distinct and evolutionarily conserved hepatic macrophage niches

M Guilliams, J Bonnardel, B Haest, B Vanderborght… - Cell, 2022 - cell.com
The liver is the largest solid organ in the body, yet it remains incompletely characterized.
Here we present a spatial proteogenomic atlas of the healthy and obese human and murine …

A cellular hierarchy in melanoma uncouples growth and metastasis

P Karras, I Bordeu, J Pozniak, A Nowosad, C Pazzi… - Nature, 2022 - nature.com
Although melanoma is notorious for its high degree of heterogeneity and plasticity,, the
origin and magnitude of cell-state diversity remains poorly understood. Equally, it is unclear …

Tissue morphology influences the temporal program of human brain organoid development

I Chiaradia, I Imaz-Rosshandler, BS Nilges… - Cell stem cell, 2023 - cell.com
Progression through fate decisions determines cellular composition and tissue architecture,
but how that same architecture may impact cell fate is less clear. We took advantage of …

[HTML][HTML] Single-cell spatial multi-omics and deep learning dissect enhancer-driven gene regulatory networks in liver zonation

C Bravo Gonzalez-Blas, I Matetovici, H Hillen… - Nature Cell …, 2024 - nature.com
In the mammalian liver, hepatocytes exhibit diverse metabolic and functional profiles based
on their location within the liver lobule. However, it is unclear whether this spatial variation …

Single-cell spatial transcriptomics reveals a dynamic control of metabolic zonation and liver regeneration by endothelial cell Wnt2 and Wnt9b

S Hu, S Liu, Y Bian, M Poddar, S Singh, C Cao… - Cell Reports …, 2022 - cell.com
The conclusive identity of Wnts regulating liver zonation (LZ) and regeneration (LR) remains
unclear despite an undisputed role of β-catenin. Using single-cell analysis, we identified a …

[HTML][HTML] Multimodal spatiotemporal phenotyping of human retinal organoid development

P Wahle, G Brancati, C Harmel, Z He, G Gut… - Nature …, 2023 - nature.com
Organoids generated from human pluripotent stem cells provide experimental systems to
study development and disease, but quantitative measurements across different spatial …

Diversity and function of motile ciliated cell types within ependymal lineages of the zebrafish brain

PP D'Gama, T Qiu, MI Cosacak, D Rayamajhi, A Konac… - Cell reports, 2021 - cell.com
Motile cilia defects impair cerebrospinal fluid (CSF) flow and can cause brain and spine
disorders. The development of ciliated cells, their impact on CSF flow, and their function in …

Widespread bacterial diversity within the bacteriome of fungi

AJ Robinson, GL House, DP Morales… - Communications …, 2021 - nature.com
Abstract Knowledge of associations between fungal hosts and their bacterial associates has
steadily grown in recent years as the number and diversity of examinations have increased …