Advances and prospects for the Human BioMolecular Atlas Program (HuBMAP)

S Jain, L Pei, JM Spraggins, M Angelo, JP Carson… - Nature cell …, 2023 - nature.com
Abstract The Human BioMolecular Atlas Program (HuBMAP) aims to create a multi-scale
spatial atlas of the healthy human body at single-cell resolution by applying advanced …

Spatial transcriptomics in health and disease

S Jain, MT Eadon - Nature Reviews Nephrology, 2024 - nature.com
The ability to localize hundreds of macromolecules to discrete locations, structures and cell
types in a tissue is a powerful approach to understand the cellular and spatial organization …

Transcriptomic, epigenomic, and spatial metabolomic cell profiling redefines regional human kidney anatomy

H Li, D Li, N Ledru, Q Xuanyuan, H Wu, A Asthana… - Cell metabolism, 2024 - cell.com
A large-scale multimodal atlas that includes major kidney regions is lacking. Here, we
employed simultaneous high-throughput single-cell ATAC/RNA sequencing (SHARE-seq) …

Hest-1k: A dataset for spatial transcriptomics and histology image analysis

G Jaume, P Doucet, AH Song, MY Lu… - arXiv preprint arXiv …, 2024 - arxiv.org
Spatial transcriptomics (ST) enables interrogating the molecular composition of tissue with
ever-increasing resolution, depth, and sensitivity. However, costs, rapidly evolving …

Understanding formation processes of calcareous nephrolithiasis in renal interstitium and tubule lumen

C Dong, J Zhou, X Su, Z He, Q Song… - Journal of Cellular …, 2024 - Wiley Online Library
Kidney stone, one of the oldest known diseases, has plagued humans for centuries,
consistently imposing a heavy burden on patients and healthcare systems worldwide due to …

Precision Medicine in Nephrology: An Integrative Framework of Multidimensional Data in the Kidney Precision Medicine Project

TM El-Achkar, MT Eadon, M Kretzler… - American Journal of …, 2024 - Elsevier
Chronic kidney disease (CKD) and acute kidney injury (AKI) are heterogeneous syndromes
defined clinically by serial measures of kidney function. Each condition possesses strong …

[HTML][HTML] Challenges and Opportunities for the Clinical Translation of Spatial Transcriptomics Technologies

KD Smith, DK Prince, JW MacDonald… - Glomerular …, 2024 - karger.com
Background: The first spatially resolved transcriptomics platforms, GeoMx (Nanostring) and
Visium (10x Genomics) were launched in 2019 and were recognized as the method of the …

[HTML][HTML] Spatial Transcriptomics: A Powerful Tool in Disease Understanding and Drug Discovery

J Cao, C Li, Z Cui, S Deng, T Lei, W Liu, H Yang… - Theranostics, 2024 - ncbi.nlm.nih.gov
Recent advancements in modern science have provided robust tools for drug discovery. The
rapid development of transcriptome sequencing technologies has given rise to single-cell …

[HTML][HTML] Spatial transcriptomics: Integrating morphology and molecular mechanisms of kidney diseases

P Isnard, BD Humphreys - The American Journal of Pathology, 2024 - Elsevier
The recent arrival of high-resolution spatial transcriptomics (ST) technologies is generating a
veritable revolution in life sciences, enabling biomolecules to be measured in their native …

Osteopontin/SPP1: a potential mediator between immune cells and vascular calcification

Y Zhao, Z Huang, L Gao, H Ma, R Chang - Frontiers in Immunology, 2024 - frontiersin.org
Vascular calcification (VC) is considered a common pathological process in various vascular
diseases. Accumulating studies have confirmed that VC is involved in the inflammatory …