Classification of intrinsically disordered regions and proteins

R Van Der Lee, M Buljan, B Lang, RJ Weatheritt… - Chemical …, 2014 - ACS Publications
Over the past decade, we have observed a massive increase in the amount of information
describing protein sequences from a variety of organisms. 1, 2 While this may reflect the …

Evolution of new functions de novo and from preexisting genes

DI Andersson… - Cold Spring Harbor …, 2015 - cshperspectives.cshlp.org
How the enormous structural and functional diversity of new genes and proteins was
generated (estimated to be 1010–1012 different proteins in all organisms on earth [Choi IG …

Structural disorder in eukaryotes

R Pancsa, P Tompa - PloS one, 2012 - journals.plos.org
Based on early bioinformatic studies on a handful of species, the frequency of structural
disorder of proteins is generally thought to be much higher in eukaryotes than in …

A new census of protein tandem repeats and their relationship with intrinsic disorder

M Delucchi, E Schaper, O Sachenkova, A Elofsson… - Genes, 2020 - mdpi.com
Protein tandem repeats (TRs) are often associated with immunity-related functions and
diseases. Since that last census of protein TRs in 1999, the number of curated proteins …

The evolutionary origins of cell type diversification and the role of intrinsically disordered proteins

KJ Niklas, AK Dunker, I Yruela - Journal of Experimental Botany, 2018 - academic.oup.com
abstract The evolution of complex multicellular life forms occurred multiple times and was
attended by cell type specialization. We review seven lines of evidence indicating that …

Kirkwood–Buff approach rescues overcollapse of a disordered protein in canonical protein force fields

D Mercadante, S Milles, G Fuertes… - The journal of …, 2015 - ACS Publications
Understanding the function of intrinsically disordered proteins is intimately related to our
capacity to correctly sample their conformational dynamics. So far, a gap between …

[HTML][HTML] Dissecting the functional contributions of the intrinsically disordered C-terminal tail of Bacillus subtilis FtsZ

MC Cohan, AMP Eddelbuettel, PA Levin… - Journal of molecular …, 2020 - Elsevier
FtsZ is a bacterial GTPase that is central to the spatial and temporal control of cell division. It
is a filament-forming enzyme that encompasses a well-folded core domain and a disordered …

Characterization of Intersubunit Communication in the Virginiamycin trans-Acyl Transferase Polyketide Synthase

J Dorival, T Annaval, F Risser, S Collin… - Journal of the …, 2016 - ACS Publications
Modular polyketide synthases (PKSs) direct the biosynthesis of clinically valuable secondary
metabolites in bacteria. The fidelity of chain growth depends on specific recognition between …

Mesophiles vs. Thermophiles: Untangling the Hot Mess of Intrinsically Disordered Proteins and Growth Temperature of Bacteria

A Kruglikov, X Xia - International Journal of Molecular Sciences, 2024 - mdpi.com
The dynamic structures and varying functions of intrinsically disordered proteins (IDPs) have
made them fascinating subjects in molecular biology. Investigating IDP abundance in …

Mechanism of intersubunit ketosynthase–dehydratase interaction in polyketide synthases

M Jenner, S Kosol, D Griffiths… - Nature chemical …, 2018 - nature.com
Modular polyketide synthases (PKSs) produce numerous structurally complex natural
products that have diverse applications in medicine and agriculture. PKSs typically consist of …