Visualization of biomolecular structures: State of the art revisited

B Kozlíková, M Krone, M Falk, N Lindow… - Computer Graphics …, 2017 - Wiley Online Library
Structural properties of molecules are of primary concern in many fields. This report provides
a comprehensive overview on techniques that have been developed in the fields of …

From complex data to clear insights: visualizing molecular dynamics trajectories

H Belghit, M Spivak, M Dauchez, M Baaden… - Frontiers in …, 2024 - frontiersin.org
Advances in simulations, combined with technological developments in high-performance
computing, have made it possible to produce a physically accurate dynamic representation …

Interactive visualization of RNA and DNA structures

N Lindow, D Baum, M Leborgne… - IEEE transactions on …, 2018 - ieeexplore.ieee.org
The analysis and visualization of nucleic acids (RNA and DNA) is playing an increasingly
important role due to their fundamental importance for all forms of life and the growing …

Physics-based visual characterization of molecular interaction forces

P Hermosilla, J Estrada, V Guallar… - IEEE transactions on …, 2016 - ieeexplore.ieee.org
Molecular simulations are used in many areas of biotechnology, such as drug design and
enzyme engineering. Despite the development of automatic computational protocols …

Uncertainty visualization for secondary structures of proteins

C Schulz, K Schatz, M Krone, M Braun… - 2018 IEEE Pacific …, 2018 - ieeexplore.ieee.org
We present a technique that conveys the uncertainty in the secondary structure of proteins-
an abstraction model based on atomic coordinates. While protein data inherently contains …

[HTML][HTML] Dy-SheHeRASADe: A representation of the β sheet dynamics through surface descriptors

H Belghit, M Dauchez, JM Crowet… - Journal of Molecular …, 2024 - Elsevier
Molecular dynamics (MD) simulations are important tools for studying the dynamic motions
of macromolecules at the atomic level. With the increasing capabilities of high performance …

VTX: Real-time high-performance molecular structure and dynamics visualization software

M Maria, S Guionnière, N Dacquay… - arXiv preprint arXiv …, 2025 - arxiv.org
VTX is a molecular visualization software capable to handle most molecular structures and
dynamics trajectories file formats. It features a real-time high-performance molecular …

生物大分子可视化技术综述

郭栋梁, 王艳芬, 李煜, 郭瑶瑶, 徐锡明… - 计算机辅助设计与图形学 …, 2021 - jcad.cn
生物大分子, 如蛋白质, 核酸, 影响着生命体的微观行为, 直接决定了物种的生命功能.
生物大分子可视化技术, 对分子生物学和生物化学领域具有重要的研究意义 …

BioMedical Visualization: Past Work, Current Trends, and Open Challenges

Medicine and biology are important research fields with a significant impact on humans and
their health. In the last few decades, many visualization strategies have been proposed for …

Analyzing residue surface proximity to interpret molecular dynamics

N Lichtenberg, R Menges, V Ageev… - Computer Graphics …, 2018 - Wiley Online Library
The surface of a molecule holds important information about the interaction behavior with
other molecules. In dynamic folding or docking processes, residues of amino acids with …