Principles of protein− protein interactions: what are the preferred ways for proteins to interact?

O Keskin, A Gursoy, B Ma, R Nussinov - Chemical reviews, 2008 - ACS Publications
Proteins are the working horse of the cellular machinery. They are responsible for diverse
functions ranging from molecular motors to signaling. They catalyze reactions, transport …

Protein–protein interaction and quaternary structure

J Janin, RP Bahadur, P Chakrabarti - Quarterly reviews of biophysics, 2008 - cambridge.org
Protein–protein recognition plays an essential role in structure and function. Specific non-
covalent interactions stabilize the structure of macromolecular assemblies, exemplified in …

CH–π hydrogen bonds in biological macromolecules

M Nishio, Y Umezawa, J Fantini, MS Weiss… - Physical Chemistry …, 2014 - pubs.rsc.org
This is a sequel to the previous Perspective “The CH–π hydrogen bond in chemistry.
Conformation, supramolecules, optical resolution and interactions involving carbohydrates” …

[图书][B] Introduction to proteins: structure, function, and motion

A Kessel, N Ben-Tal - 2018 - taylorfrancis.com
Introduction to Proteins provides a comprehensive and state-of-the-art introduction to the
structure, function, and motion of proteins for students, faculty, and researchers at all levels …

[HTML][HTML] Geometry of nonbonded interactions involving planar groups in proteins

P Chakrabarti, R Bhattacharyya - Progress in biophysics and molecular …, 2007 - Elsevier
Although hydrophobic interaction is the main contributing factor to the stability of the protein
fold, the specificity of the folding process depends on many directional interactions. An …

Secondary structure based analysis and classification of biological interfaces: identification of binding motifs in protein–protein interactions

M Guharoy, P Chakrabarti - Bioinformatics, 2007 - academic.oup.com
Motivation: The increasing amount of data on protein–protein interaction needs to be
rationalized for deriving guidelines for the alteration or design of an interface between two …

Caught in self-interaction: evolutionary and functional mechanisms of protein homooligomerization

K Hashimoto, H Nishi, S Bryant… - Physical biology, 2011 - iopscience.iop.org
Many soluble and membrane proteins form homooligomeric complexes in a cell which are
responsible for the diversity and specificity of many pathways, may mediate and regulate …

Non-redundant unique interface structures as templates for modeling protein interactions

E Cukuroglu, A Gursoy, R Nussinov, O Keskin - PloS one, 2014 - journals.plos.org
Improvements in experimental techniques increasingly provide structural data relating to
protein-protein interactions. Classification of structural details of protein-protein interactions …

Residual structure in unfolded proteins

BE Bowler - Current opinion in structural biology, 2012 - Elsevier
The denatured state ensemble (DSE) of unfolded proteins, once considered to be well-
modeled by an energetically featureless random coil, is now well-known to contain flickering …

Cavities and atomic packing in protein structures and interfaces

S Sonavane, P Chakrabarti - PLoS Computational Biology, 2008 - journals.plos.org
A comparative analysis of cavities enclosed in a tertiary structure of proteins and interfaces
formed by the interaction of two protein subunits in obligate and non-obligate categories …