The de novo design of α-helical peptides for supramolecular self-assembly

JL Beesley, DN Woolfson - Current opinion in biotechnology, 2019 - Elsevier
Highlights•The review covers the self-assembly of de novo designed α-helical
peptides.•Symmetry-directed assembly of simple components leads to more-complex …

De novo design of protein logic gates

Z Chen, RD Kibler, A Hunt, F Busch, J Pearl, M Jia… - Science, 2020 - science.org
The design of modular protein logic for regulating protein function at the posttranscriptional
level is a challenge for synthetic biology. Here, we describe the design of two-input AND …

Engineering signalling pathways in mammalian cells

AV Leopold, VV Verkhusha - Nature biomedical engineering, 2024 - nature.com
In mammalian cells, signalling pathways orchestrate cellular growth, differentiation and
survival, as well as many other processes that are essential for the proper functioning of …

De novo designed peptides for cellular delivery and subcellular localisation

GG Rhys, JA Cross, WM Dawson… - Nature Chemical …, 2022 - nature.com
Increasingly, it is possible to design peptide and protein assemblies de novo from first
principles or computationally. This approach provides new routes to functional synthetic …

Assembling membraneless organelles from de novo designed proteins

AT Hilditch, A Romanyuk, SJ Cross, R Obexer… - Nature Chemistry, 2024 - nature.com
Recent advances in de novo protein design have delivered a diversity of discrete de novo
protein structures and complexes. A new challenge for the field is to use these designs …

An engineered protein-phosphorylation toggle network with implications for endogenous network discovery

D Mishra, T Bepler, B Teague, B Berger, J Broach… - Science, 2021 - science.org
INTRODUCTION Synthetic biology applies engineering methodologies to biology to build
new functions into living cells. Through the assembly and characterization of engineered …

Supramolecular fibrillation of peptide amphiphiles induces environmental responses in aqueous droplets

R Booth, I Insua, S Ahmed, A Rioboo… - Nature …, 2021 - nature.com
Abstract One-dimensional (1D) supramolecular polymers are commonly found in natural
and synthetic systems to prompt functional responses that capitalise on hierarchical …

De novo design of a reversible phosphorylation-dependent switch for membrane targeting

L Harrington, JM Fletcher, T Heermann… - Nature …, 2021 - nature.com
Modules that switch protein-protein interactions on and off are essential to develop synthetic
biology; for example, to construct orthogonal signaling pathways, to control artificial protein …

Structural resolution of switchable states of a de novo peptide assembly

WM Dawson, EJM Lang, GG Rhys, KL Shelley… - Nature …, 2021 - nature.com
De novo protein design is advancing rapidly. However, most designs are for single states.
Here we report a de novo designed peptide that forms multiple α-helical-bundle states that …

From peptides to proteins: coiled-coil tetramers to single-chain 4-helix bundles

EA Naudin, KI Albanese, AJ Smith, B Mylemans… - Chemical …, 2022 - pubs.rsc.org
The design of completely synthetic proteins from first principles—de novo protein design—is
challenging. This is because, despite recent advances in computational protein–structure …