Metabolomics: a primer

X Liu, JW Locasale - Trends in biochemical sciences, 2017 - cell.com
Metabolomics generates a profile of small molecules that are derived from cellular
metabolism and can directly reflect the outcome of complex networks of biochemical …

Redox control of glutamine utilization in cancer

L Alberghina, D Gaglio - Cell death & disease, 2014 - nature.com
Glutamine utilization promotes enhanced growth of cancer cells. We propose a new concept
map of cancer metabolism in which mitochondrial NADH and NADPH, in the presence of a …

Quantitative determinants of aerobic glycolysis identify flux through the enzyme GAPDH as a limiting step

AA Shestov, X Liu, Z Ser, AA Cluntun, YP Hung… - elife, 2014 - elifesciences.org
Aerobic glycolysis or the Warburg Effect (WE) is characterized by the increased metabolism
of glucose to lactate. It remains unknown what quantitative changes to the activity of …

Understanding metabolism with flux analysis: From theory to application

Z Dai, JW Locasale - Metabolic engineering, 2017 - Elsevier
Quantitative and qualitative knowledge of metabolic rates (ie fluxes) over a metabolic
network and in specific cellular compartments gives insights into the regulation of …

Systems biology of host–microbe metabolomics

A Heinken, I Thiele - Wiley Interdisciplinary Reviews: Systems …, 2015 - Wiley Online Library
The human gut microbiota performs essential functions for host and well‐being, but has also
been linked to a variety of disease states, eg, obesity and type 2 diabetes. The mammalian …

Multi-scale computational study of the Warburg effect, reverse Warburg effect and glutamine addiction in solid tumors

M Shan, D Dai, A Vudem, JD Varner… - PLoS computational …, 2018 - journals.plos.org
Cancer metabolism has received renewed interest as a potential target for cancer therapy. In
this study, we use a multi-scale modeling approach to interrogate the implications of three …

A flux balance of glucose metabolism clarifies the requirements of the Warburg effect

Z Dai, AA Shestov, L Lai, JW Locasale - Biophysical journal, 2016 - cell.com
The Warburg effect, or aerobic glycolysis, is marked by the increased metabolism of glucose
to lactate in the presence of oxygen. Despite its widespread prevalence in physiology and …

Warburg effect revisited: Embodiment of classical biochemistry and organic chemistry. Current state and prospects

LG Menchikov, AA Shestov, AV Popov - Biochemistry (Moscow), 2023 - Springer
Abstract The Nobel Prize Winner (1931) Dr. Otto H. Warburg had established that the
primary energy source of the cancer cell is aerobic glycolysis (the Warburg effect). He also …

Bonded cumomer analysis of human melanoma metabolism monitored by 13C NMR spectroscopy of perfused tumor cells

AA Shestov, A Mancuso, SC Lee, L Guo… - Journal of Biological …, 2016 - ASBMB
A network model for the determination of tumor metabolic fluxes from 13 C NMR kinetic
isotopomer data has been developed and validated with perfused human DB-1 melanoma …

13C MRS and LC–MS Flux Analysis of Tumor Intermediary Metabolism

AA Shestov, SC Lee, K Nath, L Guo, DS Nelson… - Frontiers in …, 2016 - frontiersin.org
We present the first validated metabolic network model for analysis of flux through key
pathways of tumor intermediary metabolism, including glycolysis, the oxidative and non …