[HTML][HTML] Safe and sustainable by design: A computer-based approach to redesign chemicals for reduced environmental hazards

J van Dijk, H Flerlage, S Beijer, JC Slootweg… - Chemosphere, 2022 - Elsevier
Persistency of chemicals in the environment is seen a pressing issue as it results in
accumulation of chemicals over time. Persistent chemicals can be an asset in a well …

MAYGEN: an open-source chemical structure generator for constitutional isomers based on the orderly generation principle

MA Yirik, M Sorokina, C Steinbeck - Journal of Cheminformatics, 2021 - Springer
The generation of constitutional isomer chemical spaces has been a subject of
cheminformatics since the early 1960s, with applications in structure elucidation and …

Molecular structures enumeration and virtual screening in the chemical space with RetroPath2. 0

M Koch, T Duigou, P Carbonell, JL Faulon - Journal of cheminformatics, 2017 - Springer
Background Network generation tools coupled with chemical reaction rules have been
mainly developed for synthesis planning and more recently for metabolic engineering. Using …

Chemical graph generators

MA Yirik, C Steinbeck - PLOS Computational Biology, 2021 - journals.plos.org
Chemical graph generators are software packages to generate computer representations of
chemical structures adhering to certain boundary conditions. Their development is a …

Bio-and chemoinformatics approaches for metabolomics data analysis

M Witting - Metabolic Profiling: Methods and Protocols, 2018 - Springer
Metabolomics data analysis includes several repetitive tasks, including data sorting,
calculation of exact masses or other physicochemical properties, or searching for identifiers …

Development of database assisted structure identification (dasi) methods for nontargeted metabolomics

LC Menikarachchi, R Dubey, DW Hill, DN Brush… - Metabolites, 2016 - mdpi.com
Metabolite structure identification remains a significant challenge in nontargeted
metabolomics research. One commonly used strategy relies on searching biochemical …

[PDF][PDF] Curation of computational chemical libraries demonstrated with alpha-amino acids

C Mayer-Bacon, MA Yirik - UMBC Student Collection, 2022 - mdsoar.org
Exhaustive generation of molecular structures has numerous chemical and biochemical
applications such as drug design, molecular database construction, exploration of …

A Novel Automated Screening Method for Combinatorially Generated Small Molecules

P Yu, AJ Sterling, J Hein - Journal of Chemical Information and …, 2021 - ACS Publications
A main challenge in the enumeration of small-molecule chemical spaces for drug design is
to quickly and accurately differentiate between possible and impossible molecules. Current …

A Novel Automated Screening Method For Combinatorial Small Molecules

P Yu, A Sterling, J Hein - 2020 - chemrxiv.org
A main challenge in the enumeration small molecule chemical spaces for drug design is to
quickly and accurately di? erentiate between possible and impossible molecules. Current …

[PDF][PDF] A Novel Automated Screening Method

A Sterling, J Hein - 2020 - … .s3.amazonaws.com
A main challenge in the enumeration small molecule chemical spaces for drug design is to
quickly and accurately differentiate between possible and impossible molecules. Current …