Role of computer-aided drug design in modern drug discovery

SJY Macalino, V Gosu, S Hong, S Choi - Archives of pharmacal research, 2015 - Springer
Drug discovery utilizes chemical biology and computational drug design approaches for the
efficient identification and optimization of lead compounds. Chemical biology is mostly …

Hit and lead generation: beyond high-throughput screening

KH Bleicher, HJ Böhm, K Müller… - Nature reviews Drug …, 2003 - nature.com
The identification of small-molecule modulators of protein function, and the process of
transforming these into high-content lead series, are key activities in modern drug discovery …

Chemical space docking enables large-scale structure-based virtual screening to discover ROCK1 kinase inhibitors

P Beroza, JJ Crawford, O Ganichkin… - Nature …, 2022 - nature.com
With the ever-increasing number of synthesis-on-demand compounds for drug lead
discovery, there is a great need for efficient search technologies. We present the successful …

Fragment-based lead discovery

DC Rees, M Congreve, CW Murray… - Nature Reviews Drug …, 2004 - nature.com
Fragment-based lead discovery is gaining momentum in both large pharmaceutical
companies and biotechnology laboratories as a complementary approach to traditional …

Successful applications of computer aided drug discovery: moving drugs from concept to the clinic

TT Talele, SA Khedkar, AC Rigby - Current topics in medicinal …, 2010 - ingentaconnect.com
Drug discovery and development is an interdisciplinary, expensive and time-consuming
process. Scientific advancements during the past two decades have changed the way …

Lead discovery using molecular docking

BK Shoichet, SL McGovern, B Wei, JJ Irwin - Current opinion in chemical …, 2002 - Elsevier
As the structures of more and more proteins and nucleic acids become available, molecular
docking is increasingly considered for lead discovery. Recent studies consider the hit-rate …

Recent developments in fragment-based drug discovery

M Congreve, G Chessari, D Tisi… - Journal of medicinal …, 2008 - ACS Publications
The field of fragment-based drug discovery (FBDDa) has developed significantly over the
past 10 years and is now recognized as a tangible alternative to more traditional methods of …

Keynote review: Structural biology and drug discovery

M Congreve, CW Murray, TL Blundell - Drug discovery today, 2005 - Elsevier
It has long been recognized that knowledge of the 3D structures of proteins has the potential
to accelerate drug discovery, but recent developments in genome sequencing, robotics and …

Fragment-based lead discovery: leads by design

RAE Carr, M Congreve, CW Murray, DC Rees - Drug discovery today, 2005 - Elsevier
Fragment-based lead discovery (also referred to as needles, shapes, binding elements,
seed templates or scaffolds) is a new lead discovery approach in which much lower …

Docking, virtual high throughput screening and in silico fragment‐based drug design

V Zoete, A Grosdidier… - Journal of cellular and …, 2009 - Wiley Online Library
• Introduction• Docking‐Protein and ligand flexibility‐Sampling algorithm‐Scoring functions‐
Performance• Virtual high throughput screening‐Ligand‐based vHTS‐Structure‐based …