RNA-binding proteins in tumor progression

H Qin, H Ni, Y Liu, Y Yuan, T Xi, X Li… - Journal of hematology & …, 2020 - Springer
RNA-binding protein (RBP) has a highly dynamic spatiotemporal regulation process and
important biological functions. They are critical to maintain the transcriptome through post …

[图书][B] RNA, the epicenter of genetic information

J Mattick, P Amaral - 2023 - library.oapen.org
The origin story and emergence of molecular biology is muddled. The early triumphs in
bacterial genetics and the complexity of animal and plant genomes complicate an intricate …

[HTML][HTML] Mammalian circular RNAs result largely from splicing errors

C Xu, J Zhang - Cell reports, 2021 - cell.com
Ubiquitous in eukaryotes, circular RNAs (circRNAs) comprise a large class of mostly non-
coding RNAs produced by back-splicing. Although some circRNAs have demonstrated …

Regulation of neuronal RNA signatures by ELAV/Hu proteins

V Hilgers - Wiley Interdisciplinary Reviews: RNA, 2023 - Wiley Online Library
The RNA‐binding proteins encoded by the highly conserved elav/Hu gene family, found in
all metazoans, regulate the expression of a wide range of genes, at both the co …

Gene product diversity: adaptive or not?

J Zhang, C Xu - Trends in Genetics, 2022 - cell.com
One gene does not equal one RNA or protein. The genomic revolution has revealed
numerous different RNA and protein molecules that can be produced from one gene, such …

Random genetic drift sets an upper limit on mRNA splicing accuracy in metazoans

F Bénitière, A Necsulea, L Duret - Elife, 2024 - elifesciences.org
Most eukaryotic genes undergo alternative splicing (AS), but the overall functional
significance of this process remains a controversial issue. It has been noticed that the …

MAPP unravels frequent co-regulation of splicing and polyadenylation by RNA-binding proteins and their dysregulation in cancer

M Bak, E van Nimwegen, IU Kouzel, T Gur… - Nature …, 2024 - nature.com
Maturation of eukaryotic pre-mRNAs via splicing and polyadenylation is modulated across
cell types and conditions by a variety of RNA-binding proteins (RBPs). Although there exist …

Developmentally regulated alternate 3′ end cleavage of nascent transcripts controls dynamic changes in protein expression in an adult stem cell lineage

CW Berry, GH Olivares, L Gallicchio… - Genes & …, 2022 - genesdev.cshlp.org
Alternative polyadenylation (APA) generates transcript isoforms that differ in the position of
the 3′ cleavage site, resulting in the production of mRNA isoforms with different length 3 …

Genes for highly abundant proteins in Escherichia coli avoid 5' codons that promote ribosomal initiation

LE Lewin, KG Daniels, LD Hurst - Plos Computational Biology, 2023 - journals.plos.org
In many species highly expressed genes (HEGs) over-employ the synonymous codons that
match the more abundant iso-acceptor tRNAs. Bacterial transgene codon randomization …

Mammalian alternative translation initiation is mostly nonadaptive

C Xu, J Zhang - Molecular Biology and Evolution, 2020 - academic.oup.com
Alternative translation initiation (ATLI) refers to the existence of multiple translation initiation
sites per gene and is a widespread phenomenon in eukaryotes. ATLI is commonly assumed …