Chromatin states and nuclear organization in development—a view from the nuclear lamina

A Mattout, DS Cabianca, SM Gasser - Genome biology, 2015 - Springer
The spatial distribution of chromatin domains in interphase nuclei changes dramatically
during development in multicellular organisms. A crucial question is whether nuclear …

[HTML][HTML] Guidelines for DNA recombination and repair studies: Cellular assays of DNA repair pathways

HL Klein, G Bačinskaja, J Che, A Cheblal, R Elango… - Microbial …, 2019 - ncbi.nlm.nih.gov
Understanding the plasticity of genomes has been greatly aided by assays for
recombination, repair and mutagenesis. These assays have been developed in microbial …

Increased chromosome mobility facilitates homology search during recombination

J Miné-Hattab, R Rothstein - Nature cell biology, 2012 - nature.com
Homologous recombination, an essential process for preserving genomic integrity, uses
intact homologous sequences to repair broken chromosomes. To explore the mechanism of …

Increased mobility of double-strand breaks requires Mec1, Rad9 and the homologous recombination machinery

V Dion, V Kalck, C Horigome, BD Towbin… - Nature cell …, 2012 - nature.com
Chromatin mobility is thought to facilitate homology search during homologous
recombination and to shift damage either towards or away from specialized repair …

A R-loop sensing pathway mediates the relocation of transcribed genes to nuclear pore complexes

A Penzo, M Dubarry, C Brocas, M Zheng… - Nature …, 2023 - nature.com
Nuclear pore complexes (NPCs) have increasingly recognized interactions with the
genome, as exemplified in yeast, where they bind transcribed or damaged chromatin. By …

SWR1 and INO80 chromatin remodelers contribute to DNA double-strand break perinuclear anchorage site choice

C Horigome, Y Oma, T Konishi, R Schmid, I Marcomini… - Molecular cell, 2014 - cell.com
Persistent DNA double-strand breaks (DSBs) are recruited to the nuclear periphery in
budding yeast. Both the Nup84 pore subcomplex and Mps3, an inner nuclear membrane …

Physical tethering and volume exclusion determine higher-order genome organization in budding yeast

H Tjong, K Gong, L Chen, F Alber - Genome research, 2012 - genome.cshlp.org
In this paper we show that tethering of heterochromatic regions to nuclear landmarks and
random encounters of chromosomes in the confined nuclear volume are sufficient to explain …

Targeted INO80 enhances subnuclear chromatin movement and ectopic homologous recombination

FR Neumann, V Dion, LR Gehlen… - Genes & …, 2012 - genesdev.cshlp.org
Chromatin in the interphase nucleus moves in a constrained random walk. Despite
extensive study, the molecular causes of such movement and its impact on DNA-based …

The spatial dynamics of tissue-specific promoters during C. elegans development

P Meister, BD Towbin, BL Pike, A Ponti… - Genes & …, 2010 - genesdev.cshlp.org
To understand whether the spatial organization of the genome reflects the cell's
differentiated state, we examined whether genes assume specific subnuclear positions …

PolySUMOylation by Siz2 and Mms21 triggers relocation of DNA breaks to nuclear pores through the Slx5/Slx8 STUbL

C Horigome, DE Bustard, I Marcomini… - Genes & …, 2016 - genesdev.cshlp.org
High-resolution imaging shows that persistent DNA damage in budding yeast localizes in
distinct perinuclear foci for repair. The signals that trigger DNA double-strand break (DSB) …