cMonkey2: Automated, systematic, integrated detection of co-regulated gene modules for any organism
DJ Reiss, CL Plaisier, WJ Wu… - Nucleic acids research, 2015 - academic.oup.com
The cMonkey integrated biclustering algorithm identifies conditionally co-regulated modules
of genes (biclusters). cMonkey integrates various orthogonal pieces of information which …
of genes (biclusters). cMonkey integrates various orthogonal pieces of information which …
[PDF][PDF] A brief overview of Gibbs sampling
EC Rouchka - Bioinformatics Technical Report Series, No TR-ULBL …, 1997 - Citeseer
Motivation: A number of techniques exist for the detection of short, subtle conserved regions
within DNA and amino acid sequences. The purpose of this overview is to present the ideas …
within DNA and amino acid sequences. The purpose of this overview is to present the ideas …
The Gibbs centroid sampler
WA Thompson, LA Newberg, S Conlan… - Nucleic acids …, 2007 - academic.oup.com
Abstract The Gibbs Centroid Sampler is a software package designed for locating conserved
elements in biopolymer sequences. The Gibbs Centroid Sampler reports a centroid …
elements in biopolymer sequences. The Gibbs Centroid Sampler reports a centroid …
Hepatocyte nuclear factor-1β regulates Wnt signaling through genome-wide competition with β-catenin/lymphoid enhancer binding factor
SC Chan, Y Zhang, M Pontoglio… - Proceedings of the …, 2019 - National Acad Sciences
Hepatocyte nuclear factor-1β (HNF-1β) is a tissue-specific transcription factor that is
essential for normal kidney development and renal tubular function. Mutations of HNF-1β …
essential for normal kidney development and renal tubular function. Mutations of HNF-1β …
Single TRAM domain RNA‐binding proteins in Archaea: functional insight from Ctr3 from the Antarctic methanogen Methanococcoides burtonii
Taha, KS Siddiqui, S Campanaro… - Environmental …, 2016 - Wiley Online Library
TRAM domain proteins present in A rchaea and Bacteria have a β‐barrel shape with anti‐
parallel β‐sheets that form a nucleic acid binding surface; a structure also present in cold …
parallel β‐sheets that form a nucleic acid binding surface; a structure also present in cold …
High throughput binding analysis determines the binding specificity of ASF/SF2 on alternatively spliced human pre-mRNAs
B Chang, J Levin, WA Thompson… - … chemistry & high …, 2010 - ingentaconnect.com
High throughput immunoprecipitation studies of transcription factors and splicing factors
have revolutionized the fields of transcription and splicing. Recent location studies on …
have revolutionized the fields of transcription and splicing. Recent location studies on …
Guide to genome-wide bacterial transcription factor binding site prediction using OmpR as model
P Vuong, R Misra - Selected Works in Bioinformatics. Edited by …, 2011 - books.google.com
Gene expression regulation in a cell plays a crucial role in the cellular response to
environmental cues and other important biological processes (Bauer et al., 2010). A major …
environmental cues and other important biological processes (Bauer et al., 2010). A major …
Prediction of hypoxia-inducible factor binding site in whale genome and analysis of target genes regulated by predicted sites
HS Yim, JH Lee - Journal of Marine Bioscience and Biotechnology, 2015 - koreascience.kr
Whales are marine mammals that are fully adapted to aquatic environment. Whales breathe
by lungs so they require adaptive system to low oxygen concentration (hypoxia) while deep …
by lungs so they require adaptive system to low oxygen concentration (hypoxia) while deep …
고래의게놈에서hypoxia-inducible factor binding site 의예측과target gene 에대한분석
임형순， 이재학 - 한국해양바이오학회지, 2015 - dbpia.co.kr
Whales are marine mammals that are fully adapted to aquatic environment. Whales breathe
by lungs so they require adaptive system to low oxygen concentration (hypoxia) while deep …
by lungs so they require adaptive system to low oxygen concentration (hypoxia) while deep …
[PDF][PDF] Computational Approach to Predict Binding Sites for Transcription Factors in Prokaryote Genomes
P Vuong, R Misra - researchgate.net
The gene expression regulation in a cell plays a crucial role in the cellular response to
environmental cues and other important biological processes (Bauer et al., 2010). A major …
environmental cues and other important biological processes (Bauer et al., 2010). A major …