cis-Regulatory Elements in Plant Development, Adaptation, and Evolution
cis-Regulatory elements encode the genomic blueprints that ensure the proper
spatiotemporal patterning of gene expression necessary for appropriate development and …
spatiotemporal patterning of gene expression necessary for appropriate development and …
Cis-regulatory sequences in plants: their importance, discovery, and future challenges
The identification and characterization of cis-regulatory DNA sequences and how they
function to coordinate responses to developmental and environmental cues is of paramount …
function to coordinate responses to developmental and environmental cues is of paramount …
Plant pan-genomes are the new reference
Recent years have seen a surge in plant genome sequencing projects and the comparison
of multiple related individuals. The high degree of genomic variation observed led to the …
of multiple related individuals. The high degree of genomic variation observed led to the …
Widespread long-range cis-regulatory elements in the maize genome
Genetic mapping studies on crops suggest that agronomic traits can be controlled by gene–
distal intergenic loci. Despite the biological importance and the potential agronomic utility of …
distal intergenic loci. Despite the biological importance and the potential agronomic utility of …
The prevalence, evolution and chromatin signatures of plant regulatory elements
Chromatin accessibility and modification is a hallmark of regulatory DNA, the study of which
led to the discovery of cis-regulatory elements (CREs). Here, we characterize chromatin …
led to the discovery of cis-regulatory elements (CREs). Here, we characterize chromatin …
Genomic innovation for crop improvement
Crop production needs to increase to secure future food supplies, while reducing its impact
on ecosystems. Detailed characterization of plant genomes and genetic diversity is crucial …
on ecosystems. Detailed characterization of plant genomes and genetic diversity is crucial …
Reconstructing the maize leaf regulatory network using ChIP-seq data of 104 transcription factors
The transcription regulatory network inside a eukaryotic cell is defined by the combinatorial
actions of transcription factors (TFs). However, TF binding studies in plants are too few in …
actions of transcription factors (TFs). However, TF binding studies in plants are too few in …
Scaling by shrinking: empowering single-cell'omics' with microfluidic devices
Recent advances in cellular profiling have demonstrated substantial heterogeneity in the
behaviour of cells once deemed'identical', challenging fundamental notions of …
behaviour of cells once deemed'identical', challenging fundamental notions of …
On the road to breeding 4.0: unraveling the good, the bad, and the boring of crop quantitative genomics
JG Wallace, E Rodgers-Melnick… - Annual review of …, 2018 - annualreviews.org
Understanding the quantitative genetics of crops has been and will continue to be central to
maintaining and improving global food security. We outline four stages that plant breeding …
maintaining and improving global food security. We outline four stages that plant breeding …
Profiling of accessible chromatin regions across multiple plant species and cell types reveals common gene regulatory principles and new control modules
The transcriptional regulatory structure of plant genomes remains poorly defined relative to
animals. It is unclear how many cis-regulatory elements exist, where these elements lie …
animals. It is unclear how many cis-regulatory elements exist, where these elements lie …