Genotype× environment interactions in gene regulation and complex traits

C Boye, S Nirmalan, A Ranjbaran, F Luca - Nature Genetics, 2024 - nature.com
Genotype× environment interactions (GxE) have long been recognized as a key mechanism
underlying human phenotypic variation. Technological developments over the past 15 years …

Causal risk factors for asthma in Mendelian randomization studies: A systematic review and meta‐analysis

H Mikkelsen, EM Landt, M Benn… - Clinical and …, 2022 - Wiley Online Library
Background Several risk factors for asthma have been proposed; however, the causality of
these associations is sometimes unclear. Mendelian randomization is a powerful …

Single-cell eQTL analysis of activated T cell subsets reveals activation and cell type–dependent effects of disease-risk variants

BJ Schmiedel, C Gonzalez-Colin, V Fajardo… - Science …, 2022 - science.org
The impact of genetic variants on cells challenged in biologically relevant contexts has not
been fully explored. Here, we activated CD4+ T cells from 89 healthy donors and performed …

Integrating multi-omics data to analyze the potential pathogenic mechanism of CTSH gene involved in type 1 diabetes in the exocrine pancreas

Z Song, S Li, Z Shang, W Lv, X Cheng… - Briefings in …, 2024 - academic.oup.com
Abstract Type 1 diabetes (T1D) is an autoimmune disease caused by the destruction of
insulin-producing pancreatic islet beta cells. Despite significant advancements, the precise …

[HTML][HTML] COVID-19 genetic risk variants are associated with expression of multiple genes in diverse immune cell types

BJ Schmiedel, J Rocha, C Gonzalez-Colin… - Nature …, 2021 - nature.com
Common genetic polymorphisms associated with COVID-19 illness can be utilized for
discovering molecular pathways and cell types driving disease pathogenesis. Given the …

MRLocus: Identifying causal genes mediating a trait through Bayesian estimation of allelic heterogeneity

A Zhu, N Matoba, EP Wilson, AL Tapia, Y Li… - PLoS …, 2021 - journals.plos.org
Expression quantitative trait loci (eQTL) studies are used to understand the regulatory
function of non-coding genome-wide association study (GWAS) risk loci, but colocalization …

Genetic control of the dynamic transcriptional response to immune stimuli and glucocorticoids at single-cell resolution

JA Resztak, J Wei, S Zilioli, E Sendler… - Genome …, 2023 - genome.cshlp.org
Synthetic glucocorticoids, such as dexamethasone, have been used as a treatment for many
immune conditions, such as asthma and, more recently, severe COVID-19. Single-cell data …

Mapping responsive genomic elements to heat stress in a maize diversity panel

Z Liang, ZA Myers, D Petrella, J Engelhorn, T Hartwig… - Genome biology, 2022 - Springer
Background Many plant species exhibit genetic variation for coping with environmental
stress. However, there are still limited approaches to effectively uncover the genomic region …

Genetic influence on vascular smooth muscle cell apoptosis

DG McVey, C Andreadi, P Gong, PJ Stanczyk… - Cell Death & …, 2024 - nature.com
Vascular smooth muscle cell (VSMC) proliferation, migration, and apoptosis play important
roles in many physiological processes and pathological conditions. To identify genetic …

Early-life-trauma triggers interferon-β resistance and neurodegeneration in a multiple sclerosis model via downregulated β1-adrenergic signaling

YM Khaw, D Majid, S Oh, E Kang, M Inoue - Nature communications, 2021 - nature.com
Environmental triggers have important functions in multiple sclerosis (MS) susceptibility,
phenotype, and trajectory. Exposure to early life trauma (ELT) has been associated with …