Regulation of gene activation by competitive cross talking pathways

F Jiao, C Zhu - Biophysical journal, 2020 - cell.com
The phenomenon of a gene expression burst has been attributed to random transitions
between the active and inactive states of a gene. However, the mechanisms underlying …

[HTML][HTML] Analytical formula and dynamic profile of mRNA distribution

F Jiao, J Ren, J Yu - Discrete and Continuous Dynamical Systems …, 2020 - aimsciences.org
The stochasticity of transcription can be quantified by mRNA distribution $ P_m (t) $, the
probability that there are $ m $ mRNA molecules for the gene at time $ t $ in one cell …

Dynamical Regulation of mRNA Distribution by Cross‐Talking Signaling Pathways

C Zhu, G Han, F Jiao - Complexity, 2020 - Wiley Online Library
Gene transcription is a random process in single cells manifested by the observed
distribution of mRNA copy numbers in homogeneous cell populations. A central question is …

Exact results for queuing models of stochastic transcription with memory and crosstalk

Z Zhang, Q Deng, Z Wang, Y Chen, T Zhou - Physical Review E, 2021 - APS
Gene transcription is a complex multistep biochemical process, which can create memory
between individual reaction events. On the other hand, many inducible genes, when …

Inferring Transcriptional Bursting Kinetics Using Gene Expression Model with Memory and Crosstalk from scRNA-seq Data

M Wang, W Cao, Y Guo, G Wang… - Journal of …, 2024 - ui.adsabs.harvard.edu
Genetically identical cell populations growing in the same environment show a large degree
of heterogeneity in gene expression profiles, resulting in significant phenotypic …

A novel dynamical regulation of mRNA distribution by cross-talking pathways

Q Sun, Z Cai, C Zhu - Mathematics, 2022 - mdpi.com
In this paper, we use a similar approach to the one proposed by Chen and Jiao to calculate
the mathematical formulas of the generating function V (z, t) and the mass function P m (t) of …

Quantifying cell fate change under different stochastic gene activation frameworks

X Chen, Y Sheng, L Chen, M Tang… - Quantitative Biology, 2025 - Wiley Online Library
Gene transcription is a stochastic process characterized by fluctuations in mRNA levels of
the same gene in isogenic cell populations. A central question in single‐cell studies is how …

What can we learn when fitting a simple telegraph model to a complex gene expression model?

F Jiao, J Li, T Liu, Y Zhu, W Che… - PLOS Computational …, 2024 - journals.plos.org
In experiments, the distributions of mRNA or protein numbers in single cells are often fitted to
the random telegraph model which includes synthesis and decay of mRNA or protein, and …

[HTML][HTML] Dynamical mRNA distribution regulated by multi-step gene activation

Y Chen, Q Gong, Y Wu, H Yan, L Hu, F Jiao - AIP Advances, 2021 - pubs.aip.org
Transcriptional bursting has been attributed to the random switch between the off and on
states of genes. Previous studies modeled gene activation as a process involving ordered …

Nonlinear dynamics and noise actuated by the cycle of gene inactivation in stochastic transcription

J Ren, F Jiao, J Yu - Communications in Nonlinear Science and Numerical …, 2020 - Elsevier
Gene transcription is a stochastic process with random switching between gene off and on
states. In this paper, we established a cycle of gene inactivation consisting of two off states …