Potential of a newly isolated lytic bacteriophage to control Pseudomonas coronafaciens pv. garcae in coffee plants: molecular characterization with in vitro and ex vivo …

LC Mota, EC Silva, CA Quinde, B Cieza, A Basu… - Enzyme and Microbial …, 2025 - Elsevier
Traditionally, control of coffee plant bacterial halo blight (BHB) caused by the phytopathogen
Pseudomonas coronafaciens pv. garcae (Pcg) involves frequent spraying of coffee …

Pseudomonas-Tailed Lytic Phages: Genome Mechanical Analysis And Putative Correlation With Virion Morphogenesis Yield

VM Balcão, A Basu, B Cieza, FN Rossi… - Future …, 2022 - Taylor & Francis
Aim: To unveil a putative correlation between phage genome flexibility and virion
morphogenesis yield. Materials & methods: A deeper analysis of the mechanical properties …

Molecular Characterization and Genome Mechanical Features of Two Newly Isolated Polyvalent Bacteriophages Infecting Pseudomonas syringae pv. garcae

EC Silva, CA Quinde, B Cieza, A Basu, MMDC Vila… - Genes, 2024 - mdpi.com
Coffee plants have been targeted by a devastating bacterial disease, a condition known as
bacterial blight, caused by the phytopathogen Pseudomonas syringae pv. garcae (Psg) …

DeepBend: an interpretable model of DNA bendability

SR Khan, S Sakib, MS Rahman, MAH Samee - Iscience, 2023 - cell.com
The bendability of genomic DNA impacts chromatin packaging and protein-DNA binding.
However, we do not have a comprehensive understanding of the motifs influencing DNA …

Coarse-grained Molecular Dynamics Simulations of DNA Minicircles

T Swope - 2023 - rave.ohiolink.edu
Tightly bent DNA is found in both biology and structural DNA nanotechnology. Examples
include the nucleosome where DNA is tightly wrapped around histone proteins, or DNA …