The evolving metabolic landscape of chromatin biology and epigenetics

Z Dai, V Ramesh, JW Locasale - Nature Reviews Genetics, 2020 - nature.com
Molecular inputs to chromatin via cellular metabolism are modifiers of the epigenome. These
inputs—which include both nutrient availability as a result of diet and growth factor signalling …

[HTML][HTML] Mitochondria as signaling organelles control mammalian stem cell fate

RP Chakrabarty, NS Chandel - Cell stem cell, 2021 - cell.com
Recent evidence supports the notion that mitochondrial metabolism is necessary for the
determination of stem cell fate. Historically, mitochondrial metabolism is linked to the …

[HTML][HTML] Dissecting peri-implantation development using cultured human embryos and embryo-like assembloids

Z Ai, B Niu, Y Yin, L Xiang, G Shi, K Duan, S Wang… - Cell Research, 2023 - nature.com
Studies of cultured embryos have provided insights into human peri-implantation
development. However, detailed knowledge of peri-implantation lineage development as …

Proteomics reveals NNMT as a master metabolic regulator of cancer-associated fibroblasts

MA Eckert, F Coscia, A Chryplewicz, JW Chang… - Nature, 2019 - nature.com
High-grade serous carcinoma has a poor prognosis, owing primarily to its early
dissemination throughout the abdominal cavity. Genomic and proteomic approaches have …

Kynurenine pathway of tryptophan metabolism: regulatory and functional aspects

AAB Badawy - International journal of tryptophan research, 2017 - journals.sagepub.com
Regulatory and functional aspects of the kynurenine (K) pathway (KP) of tryptophan (Trp)
degradation are reviewed. The KP accounts for~ 95% of dietary Trp degradation, of which …

Metabolomics: beyond biomarkers and towards mechanisms

CH Johnson, J Ivanisevic, G Siuzdak - Nature reviews Molecular cell …, 2016 - nature.com
Metabolomics, which is the profiling of metabolites in biofluids, cells and tissues, is routinely
applied as a tool for biomarker discovery. Owing to innovative developments in informatics …

Proliferation, survival and metabolism: the role of PI3K/AKT/mTOR signalling in pluripotency and cell fate determination

JSL Yu, W Cui - Development, 2016 - journals.biologists.com
Phosphatidylinositide 3 kinases (PI3Ks) and their downstream mediators AKT and
mammalian target of rapamycin (mTOR) constitute the core components of the …

Identifying metabolites by integrating metabolome databases with mass spectrometry cheminformatics

Z Lai, H Tsugawa, G Wohlgemuth, S Mehta… - Nature …, 2018 - nature.com
Novel metabolites distinct from canonical pathways can be identified through the integration
of three cheminformatics tools: BinVestigate, which queries the BinBase gas …

Metabolomics activity screening for identifying metabolites that modulate phenotype

C Guijas, JR Montenegro-Burke, B Warth… - Nature …, 2018 - nature.com
Metabolomics, in which small-molecule metabolites (the metabolome) are identified and
quantified, is broadly acknowledged to be the omics discipline that is closest to the …

The impact of cellular metabolism on chromatin dynamics and epigenetics

MA Reid, Z Dai, JW Locasale - Nature cell biology, 2017 - nature.com
The substrates used to modify nucleic acids and chromatin are affected by nutrient
availability and the activity of metabolic pathways. Thus, cellular metabolism constitutes a …