Pharmacogenomics: current status and future perspectives

M Pirmohamed - Nature Reviews Genetics, 2023 - nature.com
Inter-individual variability in drug response, be it efficacy or safety, is common and likely to
become an increasing problem globally given the growing elderly population requiring …

CAGI, the Critical Assessment of Genome Interpretation, establishes progress and prospects for computational genetic variant interpretation methods

S Jain, C Bakolitsa, SE Brenner, P Radivojac… - Genome …, 2024 - lirias.kuleuven.be
Abstract Background: The Critical Assessment of Genome Interpretation (CAGI) aims to
advance the state-of-the-art for computational prediction of genetic variant impact …

Identification and massively parallel characterization of regulatory elements driving neural induction

F Inoue, A Kreimer, T Ashuach, N Ahituv, N Yosef - Cell stem cell, 2019 - cell.com
Epigenomic regulation and lineage-specific gene expression act in concert to drive cellular
differentiation, but the temporal interplay between these processes is largely unknown …

Massively parallel characterization of transcriptional regulatory elements

V Agarwal, F Inoue, M Schubach, D Penzar, BK Martin… - Nature, 2025 - nature.com
The human genome contains millions of candidate cis-regulatory elements (cCREs) with cell-
type-specific activities that shape both health and many disease states. However, we lack a …

CAGI, the Critical Assessment of Genome Interpretation, establishes progress and prospects for computational genetic variant interpretation methods

Genome biology, 2024 - Springer
Abstract Background The Critical Assessment of Genome Interpretation (CAGI) aims to
advance the state-of-the-art for computational prediction of genetic variant impact …

Reports from the fifth edition of CAGI: The Critical Assessment of Genome Interpretation

G Andreoletti, LR Pal, J Moult, SE Brenner - Human mutation, 2019 - Wiley Online Library
Abstract Interpretation of genomic variation plays an essential role in the analysis of cancer
and monogenic disease, and increasingly also in complex trait disease, with applications …

Optimizing sequence design strategies for perturbation MPRAs: a computational evaluation framework

J Liu, T Ashuach, F Inoue, N Ahituv… - Nucleic acids …, 2024 - academic.oup.com
The advent of perturbation-based massively parallel reporter assays (MPRAs) technique
has facilitated the delineation of the roles of non-coding regulatory elements in orchestrating …

Using Synthetic DNA Libraries to Investigate Chromatin and Gene Regulation

H Kleinschmidt, C Xu, L Bai - Chromosoma, 2023 - Springer
Despite the recent explosion in genome-wide studies in chromatin and gene regulation, we
are still far from extracting a set of genetic rules that can predict the function of the regulatory …

Transcriptional enhancers: from prediction to functional assessment on a genome-wide scale

IC Tobias, LE Abatti, SD Moorthy, S Mullany, T Taylor… - …, 2021 - cdnsciencepub.com
Enhancers are cis-regulatory sequences located distally to target genes. These sequences
consolidate developmental and environmental cues to coordinate gene expression in a …

Critical assessment of genome interpretation consortium. CAGI, the critical assessment of genome interpretation, establishes progress and pprospects for …

S Jain, C Bakolitsa, EB Steven, P Radivojac… - Genome …, 2024 - iris.uniroma1.it
Background: The Critical Assessment of Genome Interpretation (CAGI) aims to advance the
state-of-the-art for computational prediction of genetic variant impact, particularly where …