Rice functional genomics: decades' efforts and roads ahead

R Chen, Y Deng, Y Ding, J Guo, J Qiu, B Wang… - Science China Life …, 2022 - Springer
Rice (Oryza sativa L.) is one of the most important crops in the world. Since the completion of
rice reference genome sequences, tremendous progress has been achieved in …

De-domestication: an extension of crop evolution

D Wu, S Lao, L Fan - Trends in Plant Science, 2021 - cell.com
De-domestication or feralization is an interesting phenomenon in crops and livestock.
Previously, evidence for crop de-domestication was based mainly on studies using …

Origin and adaptation to high altitude of Tibetan semi-wild wheat

W Guo, M Xin, Z Wang, Y Yao, Z Hu, W Song… - Nature …, 2020 - nature.com
Tibetan wheat is grown under environmental constraints at high-altitude conditions, but its
underlying adaptation mechanism remains unknown. Here, we present a draft genome …

A syntelog-based pan-genome provides insights into rice domestication and de-domestication

D Wu, L Xie, Y Sun, Y Huang, L Jia, C Dong, E Shen… - Genome Biology, 2023 - Springer
Background Asian rice is one of the world's most widely cultivated crops. Large-scale
resequencing analyses have been undertaken to explore the domestication and de …

Regain flood adaptation in rice through a 14-3-3 protein OsGF14h

J Sun, G Zhang, Z Cui, X Kong, X Yu, R Gui… - Nature …, 2022 - nature.com
Contemporary climatic stress seriously affects rice production. Unfortunately, long-term
domestication and improvement modified the phytohormones network to achieve the …

A rice variation map derived from 10 548 rice accessions reveals the importance of rare variants

T Wang, W He, X Li, C Zhang, H He… - Nucleic Acids …, 2023 - academic.oup.com
Detailed knowledge of the genetic variations in diverse crop populations forms the basis for
genetic crop improvement and gene functional studies. In the present study, we analyzed a …

Asymmetric variation in DNA methylation during domestication and de-domestication of rice

S Cao, K Chen, K Lu, S Chen, X Zhang, C Shen… - The Plant …, 2023 - academic.oup.com
Hundreds of plant species have been domesticated to feed human civilization, while some
crops have undergone de-domestication into agricultural weeds, threatening global food …

Genomic revolution of US weedy rice in response to 21st century agricultural technologies

MJ Wedger, N Roma-Burgos, KM Olsen - Communications Biology, 2022 - nature.com
Weedy rice is a close relative of cultivated rice that devastates rice productivity worldwide. In
the southern United States, two distinct strains have been historically predominant, but the …

Agricultural weeds: the contribution of domesticated species to the origin and evolution of feral weeds

RB Vercellino, F Hernández, C Pandolfo… - Pest Management …, 2023 - Wiley Online Library
Agricultural weeds descended from domesticated ancestors, directly from crops
(endoferality) and/or from crop–wild hybridization (exoferality), may have evolutionary …

Into the weeds: new insights in plant stress

G Sharma, JN Barney, JH Westwood, DC Haak - Trends in Plant Science, 2021 - cell.com
Weeds, plants that thrive in the face of disturbance, have eluded human's attempts at control
for> 12 000 years, positioning them as a unique group of extreme stress tolerators. The most …